WormBase Tree Display for Gene: WBGene00007708
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| WBGene00007708 | SMap | S_parent | Sequence | C25A1 | ||
|---|---|---|---|---|---|---|
| Identity (6) | ||||||
| Gene_info | Biotype | SO:0001217 | ||||
| Gene_class | nola | |||||
| Allele | WBVar01499739 | |||||
| WBVar01499786 | ||||||
| WBVar01499054 | ||||||
| WBVar02151736 | ||||||
| WBVar02156455 | ||||||
| WBVar01498959 | ||||||
| Strain | WBStrain00051227 | |||||
| WBStrain00051917 | ||||||
| RNASeq_FPKM (74) | ||||||
| GO_annotation (12) | ||||||
| Contained_in_operon | CEOP1588 | |||||
| CEOP5621 | ||||||
| Ortholog (13) | ||||||
| Structured_description | Automated_description | Predicted to enable telomerase RNA binding activity. Predicted to be involved in rRNA pseudouridine synthesis and snRNA pseudouridine synthesis. Predicted to be located in nucleolus. Predicted to be part of box H/ACA snoRNP complex. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 1. Is an ortholog of human NOP10 (NOP10 ribonucleoprotein). | Paper_evidence | WBPaper00065943 | ||
| Curator_confirmed | WBPerson324 | |||||
| WBPerson37462 | ||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||
| Disease_info | Potential_model | EFO:MONDO:0000148 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14378) | |
| DOID:0070015 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14378) | |||
| Molecular_info | Corresponding_CDS | C25A1.6 | ||||
| Corresponding_CDS_history | C25A1.6:wp52 | |||||
| Corresponding_transcript | C25A1.6.1 | |||||
| Other_sequence | MJC00016_1 | |||||
| MJ01421 | ||||||
| NBC00298_1 | ||||||
| Tcir_isotig20326 | ||||||
| BXC03395_1 | ||||||
| JI257323.1 | ||||||
| DN556738.1 | ||||||
| MH01721 | ||||||
| DN557300.1 | ||||||
| DIC01825_1 | ||||||
| BU666098.1 | ||||||
| Name_isotig02219 | ||||||
| DI02534 | ||||||
| MIC01299_1 | ||||||
| NAC00838_1 | ||||||
| LSC00536_1 | ||||||
| MI08376 | ||||||
| SR02469 | ||||||
| FG580099.1 | ||||||
| HBC00370_1 | ||||||
| LSC00143_1 | ||||||
| MI07934 | ||||||
| NB08459 | ||||||
| MHC05669_1 | ||||||
| NB07954 | ||||||
| Tcir_isotig22202 | ||||||
| RSC00305_1 | ||||||
| MI01740 | ||||||
| XIC02160_1 | ||||||
| BUC01355_1 | ||||||
| Acan_isotig20564 | ||||||
| XI04117 | ||||||
| Associated_feature | WBsf218402 | |||||
| Experimental_info | RNAi_result (26) | |||||
| Expr_pattern | Expr1020894 | |||||
| Expr1033337 | ||||||
| Expr1145179 | ||||||
| Expr2014353 | ||||||
| Expr2032594 | ||||||
| Drives_construct | WBCnstr00033540 | |||||
| Construct_product | WBCnstr00033540 | |||||
| Microarray_results (12) | ||||||
| Expression_cluster (67) | ||||||
| SAGE_tag | SAGE:cggcgccactcccaaac | Strand | Antisense | |||
| SAGE:cggcgccact | Strand | Antisense | ||||
| SAGE:aaaatattat | Strand | Antisense | ||||
| Interaction (28) | ||||||
| Map_info | Map | I | Position | 4.71854 | ||
| Positive | Positive_clone | C25A1 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
| Pseudo_map_position | ||||||
| Reference | WBPaper00027740 | |||||
| WBPaper00029211 | ||||||
| WBPaper00030479 | ||||||
| WBPaper00031949 | ||||||
| WBPaper00038491 | ||||||
| WBPaper00049828 | ||||||
| WBPaper00055090 | ||||||
| WBPaper00062599 | ||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
| Method | Gene |
