WormBase Tree Display for Variation: WBVar02156455

WBVar02156455 Name: Public_name: gk5610
    HGVSg: CHROMOSOME_I:g.10178807_10179239del
  Sequence_details: SMap: S_parent: Sequence: C25A1
    Flanking_sequences: AGCTACTCAGCACGTGCCTATTATCCTCAC GCTGGTTTGGGAGTGGCGCCGCATGTTGCG
    Mapping_target: CHROMOSOME_I
    Type_of_mutation: Deletion
    SeqStatus: Pending_curation
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00051227
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00077526
      WBGene00007708
      WBGene00007707
    Transcript: C25A1.6.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      C25A1.16a.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-222
        CDS_position: ?-2
        Protein_position: ?-1
        Exon_number: 1-2/5
      C25A1.5.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1192-?
        Exon_number: 8/8
  Isolation: Mutagen: CRISPR_Cas9
  Remark: Variation accession generated for Mark Edgley for a set of gk CRISPR alleles.
    Deletion_verification Flanking sequences and deletion extents inferred from design of CRISPR deletion/selection cassette insertion HDR event. QC-PCR assays indicate that the event is imperfect, but it was not sequenced.
  Method: Allele