WormBase Tree Display for Gene: WBGene00001149
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WBGene00001149 | SMap | S_parent | Sequence | K02A4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | bcat-1 | |||||
Sequence_name | K02A4.1 | ||||||
Molecular_name | K02A4.1 | ||||||
K02A4.1.1 | |||||||
CE03457 | |||||||
Other_name | ECA39 | Accession_evidence | EMBL | U21550 | |||
eca-39 | |||||||
CELE_K02A4.1 | Accession_evidence | NDB | BX284606 | ||||
Public_name | bcat-1 | ||||||
DB_info | Database (12) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | bcat | ||||||
Allele (46) | |||||||
Strain | WBStrain00001179 | ||||||
WBStrain00001764 | |||||||
WBStrain00047484 | |||||||
Component_of_genotype | WBGenotype00000032 | ||||||
WBGenotype00000033 | |||||||
WBGenotype00000034 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (29) | |||||||
Ortholog (45) | |||||||
Paralog | WBGene00012855 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | bcat-1 encodes a branched-chain amino acid aminotransferase that, by homology, is predicted to catalyze the first reaction in the catabolism of essential branched-chain amino acids such as leucine, isoleucine, and valine; in C. elegans, large-scale RNA-mediated interference (RNAi) screens indicate that bcat-1 activity is required for embryonic and larval development. | Paper_evidence | WBPaper00004424 | |||
WBPaper00004651 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 23 Apr 2007 00:00:00 | ||||||
Automated_description | Predicted to enable branched-chain-amino-acid transaminase activity. Involved in branched-chain amino acid catabolic process; embryo development; and nematode larval development. Acts upstream of or within determination of adult lifespan. Located in mitochondrion. Is an ortholog of human BCAT2 (branched chain amino acid transaminase 2). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | K02A4.1 | |||||
Corresponding_transcript | K02A4.1.1 | ||||||
Other_sequence | U21550 | ||||||
FF679483.1 | |||||||
Oden_isotig18863 | |||||||
AE01002 | |||||||
Hbac_isotig03157 | |||||||
PVC02535_1 | |||||||
Dviv_isotig13128 | |||||||
FC547096.1 | |||||||
EL887629.1 | |||||||
JO467718.1 | |||||||
PTC02115_1 | |||||||
JI464480.1 | |||||||
AS08973 | |||||||
Hbac_isotig04919 | |||||||
PT02596 | |||||||
FG977997.1 | |||||||
ASC23201_1 | |||||||
FD515249.1 | |||||||
Dviv_isotig32546 | |||||||
CJC01231_1 | |||||||
CBC10395_1 | |||||||
AYC04327_1 | |||||||
HBC16348_1 | |||||||
AYC03795_1 | |||||||
ACC24416_1 | |||||||
Oden_isotig21096 | |||||||
JO470700.1 | |||||||
MA00164 | |||||||
JI168795.1 | |||||||
AS07545 | |||||||
DVC01324_1 | |||||||
Acan_isotig12966 | |||||||
EV851473.1 | |||||||
EX556753.1 | |||||||
AE04444 | |||||||
EX012998.1 | |||||||
JI254456.1 | |||||||
EY458931.1 | |||||||
MAC00646_1 | |||||||
JI177348.1 | |||||||
JI177953.1 | |||||||
SS02321 | |||||||
DAC00591_1 | |||||||
GT571294.1 | |||||||
CSC00247_1 | |||||||
PP01800 | |||||||
HO348213.1 | |||||||
BUC01368_1 | |||||||
Oden_isotig23332 | |||||||
AE00206 | |||||||
CR07076 | |||||||
PPC00785_1 | |||||||
GO253026.1 | |||||||
AYC02351_1 | |||||||
EX009124.1 | |||||||
ASC06622_1 | |||||||
JI171623.1 | |||||||
CR09892 | |||||||
Dviv_isotig13129 | |||||||
SSC05704_1 | |||||||
HBC01664_1 | |||||||
PPC20691_1 | |||||||
CRC03577_1 | |||||||
DA02646 | |||||||
CJC06514_1 | |||||||
Associated_feature | WBsf717381 | ||||||
WBsf717382 | |||||||
WBsf982257 | |||||||
WBsf1007453 | |||||||
WBsf1007454 | |||||||
WBsf1007455 | |||||||
WBsf1024141 | |||||||
WBsf236520 | |||||||
Experimental_info | RNAi_result | WBRNAi00000799 | Inferred_automatically | RNAi_primary | |||
WBRNAi00027821 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113698 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00016424 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090701 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113697 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00049654 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram1431 | ||||||
Chronogram1998 | |||||||
Expr6303 | |||||||
Expr9526 | |||||||
Expr12614 | |||||||
Expr1016785 | |||||||
Expr1030730 | |||||||
Expr1153380 | |||||||
Expr2009579 | |||||||
Expr2027816 | |||||||
Drives_construct | WBCnstr00002071 | ||||||
WBCnstr00004210 | |||||||
WBCnstr00022449 | |||||||
WBCnstr00037065 | |||||||
WBCnstr00038736 | |||||||
Construct_product | WBCnstr00014091 | ||||||
WBCnstr00022449 | |||||||
WBCnstr00037065 | |||||||
WBCnstr00038736 | |||||||
Regulate_expr_cluster | WBPaper00060459:bcat-1(RNAi)_downregulated | ||||||
WBPaper00060459:bcat-1(RNAi)_upregulated | |||||||
Microarray_results (24) | |||||||
Expression_cluster (202) | |||||||
Interaction (153) | |||||||
Map_info | Map | X | Position | 8.78096 | |||
Positive | Positive_clone | K02A4 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (15) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |