WormBase Tree Display for Gene: WBGene00001149
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WBGene00001149 | SMap | S_parent | Sequence | K02A4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | bcat-1 | |||||||
Sequence_name | K02A4.1 | ||||||||
Molecular_name | K02A4.1 | ||||||||
K02A4.1.1 | |||||||||
CE03457 | |||||||||
Other_name | ECA39 | Accession_evidence | EMBL | U21550 | |||||
eca-39 | |||||||||
CELE_K02A4.1 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | bcat-1 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 07 Jul 2004 10:08:30 | WBPerson1971 | Name_change | CGC_name | bcat-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | bcat | ||||||||
Allele (46) | |||||||||
Strain | WBStrain00001179 | ||||||||
WBStrain00001764 | |||||||||
WBStrain00047484 | |||||||||
Component_of_genotype | WBGenotype00000032 | ||||||||
WBGenotype00000033 | |||||||||
WBGenotype00000034 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (27) | |||||||||
Ortholog (45) | |||||||||
Paralog | WBGene00012855 | Caenorhabditis elegans | From_analysis (3) | ||||||
Structured_description | Concise_description | bcat-1 encodes a branched-chain amino acid aminotransferase that, by homology, is predicted to catalyze the first reaction in the catabolism of essential branched-chain amino acids such as leucine, isoleucine, and valine; in C. elegans, large-scale RNA-mediated interference (RNAi) screens indicate that bcat-1 activity is required for embryonic and larval development. | Paper_evidence | WBPaper00004424 | |||||
WBPaper00004651 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 23 Apr 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable branched-chain-amino-acid transaminase activity. Involved in branched-chain amino acid catabolic process; embryo development; and nematode larval development. Acts upstream of or within determination of adult lifespan. Located in mitochondrion. Is an ortholog of human BCAT2 (branched chain amino acid transaminase 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | K02A4.1 | |||||||
Corresponding_transcript | K02A4.1.1 | ||||||||
Other_sequence | U21550 | ||||||||
FF679483.1 | |||||||||
Oden_isotig18863 | |||||||||
AE01002 | |||||||||
Hbac_isotig03157 | |||||||||
PVC02535_1 | |||||||||
Dviv_isotig13128 | |||||||||
FC547096.1 | |||||||||
EL887629.1 | |||||||||
JO467718.1 | |||||||||
PTC02115_1 | |||||||||
JI464480.1 | |||||||||
AS08973 | |||||||||
Hbac_isotig04919 | |||||||||
PT02596 | |||||||||
FG977997.1 | |||||||||
ASC23201_1 | |||||||||
FD515249.1 | |||||||||
Dviv_isotig32546 | |||||||||
CJC01231_1 | |||||||||
CBC10395_1 | |||||||||
AYC04327_1 | |||||||||
HBC16348_1 | |||||||||
AYC03795_1 | |||||||||
ACC24416_1 | |||||||||
Oden_isotig21096 | |||||||||
JO470700.1 | |||||||||
MA00164 | |||||||||
JI168795.1 | |||||||||
AS07545 | |||||||||
DVC01324_1 | |||||||||
Acan_isotig12966 | |||||||||
EV851473.1 | |||||||||
EX556753.1 | |||||||||
AE04444 | |||||||||
EX012998.1 | |||||||||
JI254456.1 | |||||||||
EY458931.1 | |||||||||
MAC00646_1 | |||||||||
JI177348.1 | |||||||||
JI177953.1 | |||||||||
SS02321 | |||||||||
DAC00591_1 | |||||||||
GT571294.1 | |||||||||
CSC00247_1 | |||||||||
PP01800 | |||||||||
HO348213.1 | |||||||||
BUC01368_1 | |||||||||
Oden_isotig23332 | |||||||||
AE00206 | |||||||||
CR07076 | |||||||||
PPC00785_1 | |||||||||
GO253026.1 | |||||||||
AYC02351_1 | |||||||||
EX009124.1 | |||||||||
ASC06622_1 | |||||||||
JI171623.1 | |||||||||
CR09892 | |||||||||
Dviv_isotig13129 | |||||||||
SSC05704_1 | |||||||||
HBC01664_1 | |||||||||
PPC20691_1 | |||||||||
CRC03577_1 | |||||||||
DA02646 | |||||||||
CJC06514_1 | |||||||||
Associated_feature | WBsf717381 | ||||||||
WBsf717382 | |||||||||
WBsf982257 | |||||||||
WBsf1007453 | |||||||||
WBsf1007454 | |||||||||
WBsf1007455 | |||||||||
WBsf1024141 | |||||||||
WBsf236520 | |||||||||
Experimental_info | RNAi_result | WBRNAi00000799 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027821 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113698 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00016424 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090701 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113697 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049654 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram1431 | ||||||||
Chronogram1998 | |||||||||
Expr6303 | |||||||||
Expr9526 | |||||||||
Expr12614 | |||||||||
Expr1016785 | |||||||||
Expr1030730 | |||||||||
Expr1153380 | |||||||||
Expr2009579 | |||||||||
Expr2027816 | |||||||||
Drives_construct | WBCnstr00002071 | ||||||||
WBCnstr00004210 | |||||||||
WBCnstr00022449 | |||||||||
WBCnstr00037065 | |||||||||
WBCnstr00038736 | |||||||||
Construct_product (4) | |||||||||
Regulate_expr_cluster | WBPaper00060459:bcat-1(RNAi)_downregulated | ||||||||
WBPaper00060459:bcat-1(RNAi)_upregulated | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (203) | |||||||||
Interaction (153) | |||||||||
Map_info | Map | X | Position | 8.78096 | |||||
Positive | Positive_clone | K02A4 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (16) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |