WormBase Tree Display for Gene: WBGene00000496
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| WBGene00000496 | SMap | S_parent | Sequence | T25G3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | chs-1 | Person_evidence | WBPerson50 | |||||
| Sequence_name | T25G3.2 | ||||||||
| Molecular_name | T25G3.2 | ||||||||
| T25G3.2.1 | |||||||||
| CE39183 | |||||||||
| T25G3.2.2 | |||||||||
| Other_name | chi-1 | CGC_data_submission | |||||||
| chs-2 | |||||||||
| CELE_T25G3.2 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | chs-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 05 Jul 2004 10:20:16 | WBPerson1971 | Name_change | CGC_name | chs-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | chs | ||||||||
| Allele (57) | |||||||||
| Strain | WBStrain00031890 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (26) | |||||||||
| Contained_in_operon | CEOP1400 | ||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00000497 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | chs-1 encodes a chitin synthase, paralogous to CHS-2; chs-1 is requiredfor embryonic chitin synthesis, eggshell synthesis and osmoticintegrity, error-free chromosomal segregation during meiosis, polar bodyextrusion, association of the sperm pronucleus/centrosome complex (SPCC)with the early embryonic cortex, localization of PAR-2 in early embryos,posterior localization of P granules or PIE-1, and pseudocleavage; CHS-1is also, independently of chitin synthesis, required for normallocalization of MBK-2 to cortex and punctae in early embryos; CHS-1 isdispensable for synthesis of pharyngeal cuticle, since chs-1(ok1120)mutants have it normally; CHS-1 localizes to the oocyte plasma membrane and .cell cortex | Paper_evidence | WBPaper00004881 | |||||
| WBPaper00006390 | |||||||||
| WBPaper00012846 | |||||||||
| WBPaper00026721 | |||||||||
| WBPaper00028588 | |||||||||
| WBPaper00029233 | |||||||||
| WBPaper00031014 | |||||||||
| WBPaper00035426 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 16 Nov 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable chitin synthase activity. Involved in cell wall chitin biosynthetic process; eggshell formation; and positive regulation of protein localization to cell cortex. Located in cell cortex and plasma membrane. Expressed in Psub1. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T25G3.2 | |||||||
| Corresponding_CDS_history | T25G3.2:wp149 | ||||||||
| Corresponding_transcript (2) | |||||||||
| Other_sequence | ACC07807_1 | ||||||||
| JI164395.1 | |||||||||
| JI164297.1 | |||||||||
| RS06819 | |||||||||
| CRC01707_1 | |||||||||
| Acan_isotig03430 | |||||||||
| CR00051 | |||||||||
| EW741923.1 | |||||||||
| CR03692 | |||||||||
| ODC00042_1 | |||||||||
| CBC12496_1 | |||||||||
| AF288618.1 | |||||||||
| HBC20153_1 | |||||||||
| HG11418 | |||||||||
| GP02158 | |||||||||
| EX008569.1 | |||||||||
| Tcir_isotig24057 | |||||||||
| CR00691 | |||||||||
| EX563158.1 | |||||||||
| Acan_isotig03431 | |||||||||
| CRC05880_1 | |||||||||
| JO470566.1 | |||||||||
| CR06528 | |||||||||
| CR01240 | |||||||||
| RSC01857_1 | |||||||||
| CRC06869_1 | |||||||||
| CJC10307_1 | |||||||||
| PPC05107_1 | |||||||||
| CR08974 | |||||||||
| HGC02052_1 | |||||||||
| CR10680 | |||||||||
| Tcir_isotig28374 | |||||||||
| CR04451 | |||||||||
| EW741369.1 | |||||||||
| Acan_isotig15164 | |||||||||
| CR07137 | |||||||||
| EX553338.1 | |||||||||
| Oden_isotig09882 | |||||||||
| EX545204.1 | |||||||||
| AM157800.1 | |||||||||
| FK803814.1 | |||||||||
| JI212129.1 | |||||||||
| Dviv_isotig22966 | |||||||||
| Tcol_isotig14013 | |||||||||
| Oden_isotig09883 | |||||||||
| EX556362.1 | |||||||||
| JI215554.1 | |||||||||
| CBC02052_1 | |||||||||
| Dviv_isotig15389 | |||||||||
| CR04491 | |||||||||
| GPC03233_1 | |||||||||
| CRC07946_1 | |||||||||
| CRC02050_1 | |||||||||
| PP00248 | |||||||||
| Associated_feature | WBsf643461 | ||||||||
| WBsf643462 | |||||||||
| WBsf656537 | |||||||||
| WBsf656538 | |||||||||
| WBsf218023 | |||||||||
| WBsf218024 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr3655 | ||||||||
| Expr4906 | |||||||||
| Expr11042 | |||||||||
| Expr14401 | |||||||||
| Expr1011456 | |||||||||
| Expr1030292 | |||||||||
| Expr1157706 | |||||||||
| Expr2009999 | |||||||||
| Expr2028240 | |||||||||
| Drives_construct | WBCnstr00011576 | ||||||||
| WBCnstr00037497 | |||||||||
| Construct_product | WBCnstr00001287 | ||||||||
| WBCnstr00019030 | |||||||||
| WBCnstr00037497 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (168) | |||||||||
| Interaction (188) | |||||||||
| Map_info | Map | I | Position | 2.13842 | Error | 0.012536 | |||
| Positive | Positive_clone | T25G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4887 | |||||||
| 5298 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (23) | |||||||||
| Remark | Gene was renamed from chi-1 to chs-1 at request of CGC, note that the other name 'chs-2' is from the Brugia malayi ortholog...this ortholog may be renamed in the future to clarify the situation. | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
