WormBase Tree Display for Gene: WBGene00000392
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WBGene00000392 | SMap | S_parent | Sequence | F49E8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | cdd-2 | |||||||
Sequence_name | F49E8.4 | ||||||||
Molecular_name | F49E8.4 | ||||||||
F49E8.4.1 | |||||||||
CE10792 | |||||||||
Other_name | CELE_F49E8.4 | Accession_evidence | NDB | BX284604 | |||||
Public_name | cdd-2 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cdd | ||||||||
Allele (17) | |||||||||
Strain | WBStrain00031440 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (27) | |||||||||
Contained_in_operon | CEOP4228 | ||||||||
CEOP4618 | |||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00000391 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | A functional cytidine deaminase that affects morphology of embryos; it is expressed at all life cycle stages. | Paper_evidence | WBPaper00005385 | |||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables RNA binding activity; cytidine deaminase activity; and deoxycytidine deaminase activity. Involved in RNA modification; embryo development; and pyrimidine nucleoside metabolic process. Predicted to be located in cytosol. Expressed in intestine. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma and stomach cancer. Is an ortholog of human CDA (cytidine deaminase). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1712) | ||||
DOID:10534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1712) | ||||||
Molecular_info | Corresponding_CDS | F49E8.4 | |||||||
Corresponding_transcript | F49E8.4.1 | ||||||||
Other_sequence | AS09798 | ||||||||
BMC04376_3 | |||||||||
ES742449.1 | |||||||||
Acan_isotig16673 | |||||||||
EX014752.1 | |||||||||
DI01056 | |||||||||
CR10901 | |||||||||
ES411758.1 | |||||||||
JO473740.1 | |||||||||
Dviv_isotig05097 | |||||||||
FE916623.1 | |||||||||
ES741266.1 | |||||||||
EX915524.1 | |||||||||
Tcol_isotig07970 | |||||||||
HCC12438_1 | |||||||||
JI179468.1 | |||||||||
EX008573.1 | |||||||||
HC09702 | |||||||||
JO467788.1 | |||||||||
Hbac_isotig05838 | |||||||||
EX011688.1 | |||||||||
ES414136.1 | |||||||||
CRC06164_1 | |||||||||
GPC03179_1 | |||||||||
AS00141 | |||||||||
ES744436.1 | |||||||||
JI182235.1 | |||||||||
HGC06284_1 | |||||||||
PPC04780_1 | |||||||||
CBC13875_1 | |||||||||
Tcol_isotig07971 | |||||||||
ASC02092_1 | |||||||||
BMC12473_1 | |||||||||
Oden_isotig16521 | |||||||||
Name_isotig03684 | |||||||||
Tcir_isotig28272 | |||||||||
DIC00604_1 | |||||||||
CR10900 | |||||||||
CJC01071_1 | |||||||||
Tcir_isotig27562 | |||||||||
ES741751.1 | |||||||||
EX013284.1 | |||||||||
AS02596 | |||||||||
EX013326.1 | |||||||||
BMC04376_4 | |||||||||
PP01077 | |||||||||
ES410543.1 | |||||||||
AS02202 | |||||||||
HBC00948_1 | |||||||||
ES740635.1 | |||||||||
X91065.1 | |||||||||
EX007591.1 | |||||||||
ES741724.1 | |||||||||
BMC15914_1 | |||||||||
Dviv_isotig05096 | |||||||||
Associated_feature | WBsf230292 | ||||||||
Experimental_info | RNAi_result | WBRNAi00062880 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090631 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062881 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032552 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062878 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047871 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062879 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015333 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1914 | ||||||||
Expr1916 | |||||||||
Expr1021614 | |||||||||
Expr1030214 | |||||||||
Expr1151701 | |||||||||
Expr2009794 | |||||||||
Expr2028034 | |||||||||
Drives_construct | WBCnstr00010517 | ||||||||
WBCnstr00019844 | |||||||||
WBCnstr00037574 | |||||||||
Construct_product | WBCnstr00019844 | ||||||||
WBCnstr00037574 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (124) | |||||||||
Interaction (49) | |||||||||
Map_info | Map | IV | Position | 3.34969 | Error | 0.001769 | |||
Positive | Positive_clone | F49E8 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4190 | |||||||
4563 | |||||||||
Pseudo_map_position | |||||||||
Reference (6) | |||||||||
Remark | Sequence connection from [Thompson FJ, Britton C, Wheatley I, Devaney E], [020808 krb] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |