WormBase Tree Display for Gene: WBGene00000282
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WBGene00000282 | SMap | S_parent | Sequence | R01E6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | XO161 | |||||
WormQTL | gene | WBGene00000282 | |||||||
WormFlux | gene | WBGene00000282 | |||||||
NDB | locus_tag | CELE_R01E6.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000282|UniProtKB=Q21614 | |||||||
family | PTHR18952 | ||||||||
NCBI | gene | 181478 | |||||||
RefSeq | protein | NM_077864.6 | |||||||
NM_077863.9 | |||||||||
TrEMBL | UniProtAcc | Q8WQD8 | |||||||
Q21614 | |||||||||
UniProt_GCRP | UniProtAcc | Q21614 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cah | ||||||||
Allele (38) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Ortholog (32) | |||||||||
Paralog | WBGene00000279 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000280 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000281 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000283 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000284 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | cah-4 encodes a carbonic anhydrase homolog, which is rather divergent from other such homologs in C. elegans (with at most 38% identity to any other carbonic anhydrase, in or out of C. elegans); it is individually dispensable for viability and for grossly normal postembryonic morphology, and thus may have a more subtle biological function than the basic cytoprotective functions expected for carbonic anhydrases. | Curator_confirmed | WBPerson567 | |||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables carbonate dehydratase activity. Involved in small molecule metabolic process. Predicted to be located in cytoplasm. Expressed in several structures, including body wall musculature; enteric muscle; excretory cell; rectal muscle; and somatic nervous system. Is an ortholog of several human genes including CA1 (carbonic anhydrase 1); CA3 (carbonic anhydrase 3); and CA5A (carbonic anhydrase 5A). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Modifies_disease | DOID:11723 | ||||||||
Modifies_disease_in_annotation | WBDOannot00000425 | ||||||||
WBDOannot00000430 | |||||||||
WBDOannot00000431 | |||||||||
Molecular_info | Corresponding_CDS | R01E6.3a | |||||||
R01E6.3b | |||||||||
Corresponding_CDS_history | R01E6.3:wp65 | ||||||||
Corresponding_transcript | R01E6.3a.1 | ||||||||
R01E6.3b.1 | |||||||||
Other_sequence | Dviv_isotig16768 | ||||||||
SC00563 | |||||||||
Acan_isotig13428 | |||||||||
EX543579.1 | |||||||||
HBC02789_1 | |||||||||
HCC01322_1 | |||||||||
NBC03222_1 | |||||||||
AAC00583_1 | |||||||||
PPC05231_1 | |||||||||
Tcir_isotig26092 | |||||||||
Name_isotig02100 | |||||||||
FC547622.1 | |||||||||
AYC02716_1 | |||||||||
Oden_isotig20170 | |||||||||
MA00310 | |||||||||
CGC01273_1 | |||||||||
DN190647.1 | |||||||||
HC03153 | |||||||||
CJC03038_1 | |||||||||
CGC00352_1 | |||||||||
EX007405.1 | |||||||||
ACC08634_1 | |||||||||
ES413517.1 | |||||||||
AE04143 | |||||||||
CBC02106_1 | |||||||||
EY471590.1 | |||||||||
Hbac_isotig01802 | |||||||||
Dviv_isotig16769 | |||||||||
GR977778.1 | |||||||||
Acan_isotig04949 | |||||||||
TV00665 | |||||||||
NB09480 | |||||||||
Tcir_isotig29567 | |||||||||
CBC00595_1 | |||||||||
Tcol_isotig12258 | |||||||||
ACC00397_1 | |||||||||
EX538432.1 | |||||||||
Associated_feature | WBsf648678 | ||||||||
WBsf716638 | |||||||||
WBsf1007641 | |||||||||
WBsf1024250 | |||||||||
WBsf236581 | |||||||||
WBsf236582 | |||||||||
WBsf236583 | |||||||||
WBsf236584 | |||||||||
Experimental_info | RNAi_result | WBRNAi00000716 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027423 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077519 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098178 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017294 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026008 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00110318 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077520 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026009 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00051096 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr8777 | ||||||||
Expr9209 | |||||||||
Expr9943 | |||||||||
Expr9944 | |||||||||
Expr15868 | |||||||||
Expr1011544 | |||||||||
Expr1030184 | |||||||||
Expr1154803 | |||||||||
Expr2009698 | |||||||||
Expr2027937 | |||||||||
Drives_construct | WBCnstr00013515 | ||||||||
WBCnstr00013798 | |||||||||
WBCnstr00014952 | |||||||||
WBCnstr00014953 | |||||||||
WBCnstr00015746 | |||||||||
WBCnstr00015747 | |||||||||
WBCnstr00015748 | |||||||||
WBCnstr00015749 | |||||||||
WBCnstr00037607 | |||||||||
Construct_product | WBCnstr00015747 | ||||||||
WBCnstr00015748 | |||||||||
WBCnstr00015749 | |||||||||
WBCnstr00037607 | |||||||||
Microarray_results (28) | |||||||||
Expression_cluster (239) | |||||||||
Interaction (16) | |||||||||
Map_info | Map | X | Position | 12.7093 | Error | 0.004543 | |||
Positive | Positive_clone | R01E6 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark | Sequence connection from [Hewett-Emmett D] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |