WormBase Tree Display for Gene: WBGene00006928
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| WBGene00006928 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | vit-4 | Person_evidence | WBPerson71 | |||||
| Sequence_name | F59D8.2 | ||||||||
| Molecular_name | F59D8.2 | ||||||||
| F59D8.2.1 | |||||||||
| CE26817 | |||||||||
| Other_name | F59D8.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| F59D8.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F59D8.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | vit-4 | ||||||||
| DB_info | Database | AceView | gene | XE176 | |||||
| WormQTL | gene | WBGene00006928 | |||||||
| WormFlux | gene | WBGene00006928 | |||||||
| NDB | locus_tag | CELE_F59D8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006928|UniProtKB=P18947 | |||||||
| family | PTHR23345 | ||||||||
| NCBI | gene | 180646 | |||||||
| RefSeq | protein | NM_076211.8 | |||||||
| SwissProt | UniProtAcc | P18947 | |||||||
| TREEFAM | TREEFAM_ID | TF332911 | |||||||
| UniProt_GCRP | UniProtAcc | P18947 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vit | ||||||||
| Allele (36) | |||||||||
| Legacy_information | Structural gene for vitellogenin yp170A; adjacent to vit-3. | ||||||||
| [C.elegansII] NMK. Encodes vitellogenin yp170A (95% identical to VIT-5). Gene adjacent and nearly identical to vit-3. [Speith et al. 1985b; BL] | |||||||||
| Strain | WBStrain00032883 | ||||||||
| WBStrain00047209 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00039636 | ||||||||
| 00039637 | |||||||||
| 00039638 | |||||||||
| 00039639 | |||||||||
| 00115040 | |||||||||
| 00115041 | |||||||||
| Ortholog (92) | |||||||||
| Paralog | WBGene00006925 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006926 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006927 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006930 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006929 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59D8.2 | |||||||
| Corresponding_transcript | F59D8.2.1 | ||||||||
| Other_sequence | FK801480.1 | ||||||||
| FF678385.1 | |||||||||
| CJC18127_1 | |||||||||
| CR05816 | |||||||||
| FK808526.1 | |||||||||
| FG976463.1 | |||||||||
| ACC19366_1 | |||||||||
| FF678915.1 | |||||||||
| CBC10589_1 | |||||||||
| FK803766.1 | |||||||||
| FK804173.1 | |||||||||
| FK800727.1 | |||||||||
| EV851612.1 | |||||||||
| FK803298.1 | |||||||||
| FK808378.1 | |||||||||
| CBC00693_1 | |||||||||
| CGC01145_1 | |||||||||
| CR10961 | |||||||||
| FK810017.1 | |||||||||
| DW718500.1 | |||||||||
| CRC01029_2 | |||||||||
| EX910196.1 | |||||||||
| FF678863.1 | |||||||||
| FK809424.1 | |||||||||
| FK801537.1 | |||||||||
| FK805780.1 | |||||||||
| FK801544.1 | |||||||||
| FK804368.1 | |||||||||
| CRC03608_1 | |||||||||
| EX915432.1 | |||||||||
| FK805649.1 | |||||||||
| FK805301.1 | |||||||||
| CR00578 | |||||||||
| NAC02653_1 | |||||||||
| CSC01747_1 | |||||||||
| FK804551.1 | |||||||||
| DW677740.1 | |||||||||
| FK804534.1 | |||||||||
| CGC00754_1 | |||||||||
| FK801271.1 | |||||||||
| FK802718.1 | |||||||||
| FK809199.1 | |||||||||
| FK799978.1 | |||||||||
| FK803686.1 | |||||||||
| FK800158.1 | |||||||||
| FK802448.1 | |||||||||
| FK808153.1 | |||||||||
| FG974206.1 | |||||||||
| GE625284.1 | |||||||||
| FK808608.1 | |||||||||
| OOC00114_1 | |||||||||
| FK804279.1 | |||||||||
| FF678733.1 | |||||||||
| FF678770.1 | |||||||||
| Name_isotig00743 | |||||||||
| CGC00264_1 | |||||||||
| FK809403.1 | |||||||||
| FG978936.1 | |||||||||
| FK809257.1 | |||||||||
| FD515055.1 | |||||||||
| FF679006.1 | |||||||||
| FF679250.1 | |||||||||
| PPC00020_4 | |||||||||
| FK801452.1 | |||||||||
| FK804504.1 | |||||||||
| FD515461.1 | |||||||||
| FK800011.1 | |||||||||
| FK801207.1 | |||||||||
| FK808666.1 | |||||||||
| CRC01657_1 | |||||||||
| FF678952.1 | |||||||||
| CRC01029_1 | |||||||||
| EV851207.1 | |||||||||
| FK807177.1 | |||||||||
| FK804877.1 | |||||||||
| CGC01229_1 | |||||||||
| FK801041.1 | |||||||||
| PPC00001_1 | |||||||||
| FK804271.1 | |||||||||
| FK801499.1 | |||||||||
| FK803127.1 | |||||||||
| FF679057.1 | |||||||||
| FG972647.1 | |||||||||
| FK805426.1 | |||||||||
| CR02755 | |||||||||
| FK799889.1 | |||||||||
| CRC10884_1 | |||||||||
| FK806276.1 | |||||||||
| DVC01359_1 | |||||||||
| FK802922.1 | |||||||||
| HCC01077_1 | |||||||||
| FK801137.1 | |||||||||
| AE00146 | |||||||||
| EX913094.1 | |||||||||
| FK807268.1 | |||||||||
| FK801044.1 | |||||||||
| FK807791.1 | |||||||||
| FK801870.1 | |||||||||
| AE02198 | |||||||||
| FK804025.1 | |||||||||
| ES741291.1 | |||||||||
| EX009619.1 | |||||||||
| FK806661.1 | |||||||||
| FK800157.1 | |||||||||
| CRC07226_1 | |||||||||
| CSC01954_1 | |||||||||
| FK804220.1 | |||||||||
| FK803477.1 | |||||||||
| FK809926.1 | |||||||||
| FK807966.1 | |||||||||
| FK801021.1 | |||||||||
| FK808552.1 | |||||||||
| FK804573.1 | |||||||||
| PP00544 | |||||||||
| FG974796.1 | |||||||||
| CGC00643_1 | |||||||||
| HCC08442_1 | |||||||||
| GE625205.1 | |||||||||
| EY460067.1 | |||||||||
| FK803511.1 | |||||||||
| CJC04840_1 | |||||||||
| FF679009.1 | |||||||||
| CGC00633_1 | |||||||||
| GE625754.1 | |||||||||
| FK803439.1 | |||||||||
| Associated_feature | WBsf1004666 | ||||||||
| WBsf237187 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00049182 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00095289 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015784 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063215 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016102 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095294 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095274 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095292 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112325 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092262 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039648 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095271 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112328 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016105 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112331 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095270 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085930 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016101 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112327 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016103 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112329 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085928 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090679 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095296 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085926 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095293 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085927 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095297 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112330 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095291 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092261 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112326 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016104 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008335 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095275 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095290 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016106 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063214 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085925 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095657 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039650 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112324 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr16163 | ||||||||
| Expr1152928 | |||||||||
| Expr2036139 | |||||||||
| Drives_construct | WBCnstr00034092 | ||||||||
| Construct_product | WBCnstr00034092 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (389) | |||||||||
| Interaction (61) | |||||||||
| Map_info | Map | X | Position | -10.0749 | Error | 0.015222 | |||
| Positive | Positive_clone | F59D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| YOLK3-8 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (26) | |||||||||
| Remark | F56B6.a changed to overlapping F59D8.2 by J.Spieth [sdm 0103] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
