WormBase Tree Display for Gene: WBGene00275542

WBGene00275542 SMap: S_parent: Sequence: PPA_ChrV
  Identity: Version: 1
    Name: Sequence_name: PPA37173
      Molecular_name: PPA37173
        PPA37173.1
        PP52144
      Public_name: PPA37173
    Species: Pristionchus pacificus
    History: Version_change: 1 24 Nov 2017 16:14:21 WBPerson4055 Event: Created
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000032 0 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 14.0748 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        42.2243 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Ortholog: WBGene00148079 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00158623 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00161062 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00163222 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00190088 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00026382 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030452 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031014 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034248 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00007153 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008891 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00019917 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00138451 Caenorhabditis japonica From_analysis: WormBase-Compara
      CBOVI.g636 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4605 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14312 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g14313 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g18408 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14968 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g15776 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g14229 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g18068 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1854 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP32.g5850 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP32.g5851 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g10476 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g14109 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g2934 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g2936 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g2937 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g9873 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g21861 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g18791 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g4508 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g9518 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00014.g992 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00033.g1916 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00055.g2849 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00225.g7373 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00404.g10380 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00404.g10381 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00637.g13019 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00637.g13022 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00976.g15189 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00985.g15231 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_06970.g20600 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g15445 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_V.g19626 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_V.g22084 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold461.g1492 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold522.g2862 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold522.g2910 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02980.g28630 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_04473.g33020 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_05106.g34391 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_02820 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017708 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_019864 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00644 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01294 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04334 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09530 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10034 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g10755 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50272600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_50273000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_50273100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_50286000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00056557 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00058975 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00084372 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrII_pilon.g3233 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrII_pilon.g3240 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrV_pilon.g16181 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrV_pilon.g17636 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (59)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. Is an ortholog of C. elegans clec-41; clec-42; and clec-43. In C. elegans, clec-41 is involved in positive regulation of chemotaxis. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA37173
    Corresponding_transcript: PPA37173.1
    Other_sequence: PPC01892_1
      GPC00312_1
      PP01084
  Experimental_info: Microarray_results: GPL14372_Probes_38395
      GPL14372_Probes_38396
      GPL14372_Probes_38398
      GPL14372_Probes_38400
      GPL14372_Probes_38401
      GPL14372_Probes_38402
      GPL14372_Probes_38403
    Expression_cluster: WBPaper00041207:PP_dauer_down
      WBPaper00041606:PP_X.nematophila_regulated
  Method: Gene