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WormBase Tree Display for Gene: WBGene00108030

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Name Class

WBGene00108030SMapS_parentSequencePPA_ChrII
IdentityVersion7
NameCGC_namePpa-pax-3From_analysisInferred_from_orthology
Sequence_namePPA18476
Molecular_namePPA18476
PPA18476.1
PP74040
Other_nameGENEPREDICTION_SNAP300000075298
UMM-S245-12.28Person_evidenceWBPerson606
Public_namePpa-pax-3
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:05WBPerson4055EventImportedfrom NGASP
208 Feb 2019 15:42:30WBPerson1983Name_changeCGC_nameRemoved
308 May 2019 10:09:22WBPerson1983Name_changeCGC_namePpa-pax-3
404 Feb 2020 15:43:57WBPerson1983Name_changeCGC_nameRemoved
504 Jun 2020 14:38:21WBPerson1983Name_changeCGC_namePpa-pax-3
628 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
728 Jul 2021 11:12:27WBPerson1983Name_changeCGC_namePpa-pax-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpax
AlleleWBVar00601059Paper_evidenceWBPaper00036208
WBVar00601060Paper_evidenceWBPaper00036208
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001011.78499From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
0From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
5.35498From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00181556
00181557
OrthologWBGene00024188Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00141911Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00164145Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00223917Brugia malayiFrom_analysisWormBase-Compara
WBGene00230315Brugia malayiFrom_analysisWormBase-Compara
WBGene00003939Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00121589Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00247363Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g7503Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1129Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8390Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g319Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12668Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g27413Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7568Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9430Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1254Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6726Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00760.g13940Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g4177Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g4178Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold563.g3969Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_04544.g33185Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04687.g33514Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05483Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_23590Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_004309Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11870Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18088Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20210800Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00071615Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrII_pilon.g5673Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00266511Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285520Trichuris murisFrom_analysisWormBase-Compara
WBGene00297273Trichuris murisFrom_analysisWormBase-Compara
Paralog (16)
Structured_descriptionConcise_descriptionPpa-pax-3 encodes a divergent paired-like homeodomain protein that does not belong to the Q50, K50, or S50 classes; PAX-3 is required for locomotion and vulval development; in Ppa-pax-3 mutant animals, P(5-8).p die of programmed cell death (like in Ppa-lin-39 mutant animals), whereas P(9-11).p survive and form ectopic vulva-like structures; Ppa-pax-3 is a direct target of Ppa-LIN-39/Hox; Ppa-pax-3 mutants also provide genetic evidence for PAX-3 function in myogenesis.Paper_evidence (2)
Person_evidenceWBPerson606
Curator_confirmedWBPerson1843
Date_last_updated09 Jul 2010 00:00:00
Automated_descriptionPredicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans pax-3. In C. elegans, pax-3 is involved in epidermal cell fate specification; gonad morphogenesis; and hemidesmosome assembly.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA18476
Corresponding_transcriptPPA18476.1
Other_sequenceEX541418.1
ES412914.1
JI181312.1
Oden_isotig28327
JI172818.1
HBC00705_1
JI466342.1
BXC05424_1
ACC10102_1
Experimental_infoMicroarray_resultsGPL14372_Probes_67758
GPL14372_Probes_67759
ReferenceWBPaper00029891
WBPaper00030857
WBPaper00036208
Remark[190208 pad] The CGC name Ppa-pax-3 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[200204 pad] The CGC name Ppa-pax-3 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Ppa-pax-3 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene