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WormBase Tree Display for Gene: WBGene00054254

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Name Class

WBGene00054254SMapS_parentSequenceCrem_Contig6
IdentityVersion3
NameCGC_nameCre-kat-1From_analysisInferred_from_orthology
Sequence_nameCRE26454
Molecular_nameCRE26454
CRE26454.1
RP15325
Other_namecr01.sctg3.wum.268
Public_nameCre-kat-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
229 Nov 2007 17:00:44WBPerson2970Name_changeCGC_nameCre-kat-1
303 Jul 2008 11:44:48WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE26454
Other_namecr01.sctg3.wum.268
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classkat
RNASeq_FPKMWBls:000000440.7054From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
40.7163From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
40.7272From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:000002722.2659From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
78.2355From_analysisRNASeq.remanei.WBls:0000027.control_mean
91.6337From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
95.4834From_analysisRNASeq.remanei.WBls:0000027.control_median
99.333From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
99.7094From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
WBls:0000038115.903From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
119.477From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
24.3011From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
86.5604From_analysisRNASeq.remanei.WBls:0000038.control_mean
WBls:0000041142.206From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
152.332From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
154.334From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
157.667From_analysisRNASeq.remanei.WBls:0000041.control_mean
158.004From_analysisRNASeq.remanei.WBls:0000041.control_median
161.674From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
164.059From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
171.398From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
WBls:0000063 (12)
WBls:0000101104.336From_analysisRNASeq.remanei.total_over_all_stages.control_mean
107.704From_analysisRNASeq.remanei.total_over_all_stages.control_median
GO_annotation00149583
00149584
OrthologWBGene00002183Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00020164Caenorhabditis elegansFrom_analysisTreeFam
WBGene00042782Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00148932Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00215382Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00129039Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00099611Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
CBOVI.g12828Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3124Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4408Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1259Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17417Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25564Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10004Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g12601Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g7608Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g8402Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g8404Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g8405Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00830.g14441Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-kat-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12166Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00302.g9024Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16976Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09255Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g6363Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20263720Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4928Caenorhabditis elegansFrom_analysisWormBase-Compara
chrII_pilon.g4931Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00265214Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00266709Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291702Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00054255Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00054536Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00055204Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00061916Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00074408Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00084641Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable acyltransferase activity, transferring groups other than amino-acyl groups. Is an ortholog of C. elegans kat-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE26454
Corresponding_transcriptCRE26454.1
Other_sequence (132)
Experimental_infoExpr_patternExpr1098008
Microarray_resultsGPL14146_CRE26454_859-918_0.634_161_C
GPL14146_CRE26454_936-995_0.952_1_B
GPL14146_CRE26454_977-1036_0.946_2_A
MethodGene