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WormBase Tree Display for Gene: WBGene00045401

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Name Class

WBGene00045401SMapS_parentSequenceT26F2
IdentityVersion2
NameCGC_nameeol-1Paper_evidenceWBPaper00045830
Person_evidenceWBPerson1627
Sequence_nameT26F2.3
Molecular_nameT26F2.3
T26F2.3.1
CE41028
T26F2.3.2
Other_nameCELE_T26F2.3Accession_evidenceNDBBX284605
Public_nameeol-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
History (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classeol
Allele (35)
Possibly_affected_byWBVar02157243
RNASeq_FPKM (74)
GO_annotation (20)
OrthologWBGene00032530Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00072047Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00155901Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00124264Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00052942Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00162027Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00145228Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00154356Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00138760Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00052943Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00124144Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00134111Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00219512Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00032531Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00224602Brugia malayiFrom_analysisWormBase-Compara
CSP26.g8629Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g8630Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g8631Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4324Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9393Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g11215Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g11705Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g14772Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g27818Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7607Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g7609Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g7610Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g7611Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_V.g16432Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g16433Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g16434Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g16435Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold481.g1862Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00556.g12809Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00556.g12810Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00888.g16499Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_018711Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_018712Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05716Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14739Panagrellus redivivusFrom_analysisWormBase-Compara
chrV_pilon.g16392Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237378Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00090051Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00104042Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00111298Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00118809Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00261609Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00298808Trichuris murisFrom_analysisWormBase-Compara
WBGene00302492Trichuris murisFrom_analysisWormBase-Compara
SGD:S000003215Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
Paralog (11)
Structured_descriptionConcise_descriptioneol-1 encodes a homolog of vertebrate DXO/Dom3Z, a decapping and exoribonuclease protein that functions in pre-mRNA quality control; in C. elegans, EOL-1 activity is required in the URX sensory neurons for inhibition of olfactory learning; mouse Dom3Z can functionally substitute for C. elegans EOL-1, demonstrating conservation of activity for these proteins; in adult hermaphrodites, an eol-1::gfp promoter fusion is expressed in several head and tail neurons, including URX, AVF, and PQR, and in reproductive tissues.Paper_evidenceWBPaper00045830
Curator_confirmedWBPerson1843
Date_last_updated22 Dec 2014 00:00:00
Automated_descriptionPredicted to enable 5'-3' exonuclease activity; mRNA 5'-diphosphatase activity; and mRNA binding activity. Involved in regulation of olfactory learning. Predicted to be located in cytosol and nucleus. Expressed in AVF; oxygen sensory neurons; and reproductive system.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST26F2.3
Corresponding_CDS_historyT26F2.3:wp195
T26F2.3:wp215
Corresponding_transcriptT26F2.3.1
T26F2.3.2
Other_sequenceCBC10792_1
Associated_featureWBsf234889
Experimental_infoRNAi_resultWBRNAi00054220Inferred_automaticallyRNAi_primary
WBRNAi00019270Inferred_automaticallyRNAi_primary
Expr_patternExpr12008
Expr15788
Expr1019371
Expr1157766
Expr2011336
Expr2029572
Drives_constructWBCnstr00020068
WBCnstr00020069
WBCnstr00020070
WBCnstr00023236
Construct_productWBCnstr00020068
WBCnstr00023236
WBCnstr00042520
Microarray_results (16)
Expression_cluster (290)
Map_infoMapVPosition5.86927
PositivePositive_cloneT26F2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00045830
WBPaper00051856
WBPaper00060692
WBPaper00061319
WBPaper00064708
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene