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WormBase Tree Display for Gene: WBGene00042282

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Name Class

WBGene00042282SMapS_parentSequencecb25.NA_095
IdentityVersion1
NameSequence_nameCBG24089
Molecular_nameCBG24089
CBG24089.1
CBP28305
Other_nameCBG_24089Accession_evidenceNDBHE601316
Public_nameCBG24089
DB_infoDatabaseNDBlocus_tagCBG_24089
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:12WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000021.37272From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.5417From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.59052From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.85713From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.63869From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.66245From_analysisRNASeq.briggsae.WBls:0000002.control_median
1.7832From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.237434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.284185From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.330937From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0.341409From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.455855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.295304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.323433From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.351563From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.160349From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.161443From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.103763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.490165From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.552379From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.06321From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.776688From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.960537From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.18501From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000352.15313From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.553538From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.57762From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.60632From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.63503From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.92786From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5.94526From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.575301From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.776715From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.13064From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.37281From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.48457From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.65464From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.87721From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.06961From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.66925From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.10276From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.336854From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.808571From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.852724From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.983485From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.05284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.08187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.854711From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.864649From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.924067From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001011.05284From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.35657From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.01816From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.33057From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00145440
00145441
00145442
00145443
00145444
00145445
OrthologWBGene00153953Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00190100Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00193779Caenorhabditis brenneriFrom_analysisWormBase-Compara
CBOVI.g1478Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g827Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20976Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g15495Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g10327Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g7129Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19309Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g10061Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g14395Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g17298Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10118Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00421.g10627Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-deg-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12674Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00560.g12884Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16733Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016751Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02566Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g472Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50322600Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00000951Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00225043Brugia malayiFrom_analysisWormBase-Compara
chrV_pilon.g15768Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00130509Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00064755Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00247539Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00096314Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267733Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00287712Trichuris murisFrom_analysisWormBase-Compara
WBGene00292113Trichuris murisFrom_analysisWormBase-Compara
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans deg-3. In C. elegans, deg-3 is involved in positive regulation of locomotion involved in locomotory behavior and regulation of programmed cell death.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG24089
Corresponding_CDS_historyCBG24089:bp194
Corresponding_transcriptCBG24089.1
Experimental_infoExpr_patternExpr1054083
Microarray_resultsGPL8303_CB6_WBGene00042282_A
GPL14143_CBG23194_186-245_0.808_75_B
GPL14143_CBG23194_1398-1457_0.936_1_A
MethodGene