WormBase Tree Display for Gene: WBGene00021948

WBGene00021948 SMap: S_parent: Sequence: Y55F3C
  Identity: Version: 3
    Name: CGC_name: kvs-5 Person_evidence: WBPerson260
            WBPerson145
      Sequence_name: Y55F3C.3
      Molecular_name (18)
      Other_name (3)
      Public_name: kvs-5
    DB_info: Database: AceView gene 4B505
        WormQTL gene WBGene00021948
        WormFlux gene WBGene00021948
        NDB locus_tag CELE_Y55F3C.3
        Panther gene CAEEL|WormBase=WBGene00021948|UniProtKB=U4PLR3
          family PTHR11537
        NCBI gene 176899
        RefSeq protein NM_067577.8
            NM_001307395.4
            NM_001307396.4
            NM_001307394.3
            NM_001307393.3
            NM_001307392.3
        TrEMBL UniProtAcc U4PE60
            U4PR20
            U4PBB7
            U4PAX5
            Q95XV8
            U4PLR3
        UniProt_GCRP UniProtAcc U4PLR3
        OMIM gene 600397
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 29 Jul 2011 16:30:08 WBPerson2970 Name_change: CGC_name: kvs-5
        3 04 Sep 2013 14:28:38 WBPerson4025 Event: Acquires_merge: WBGene00043706
      Acquires_merge: WBGene00043706
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: kvs
    Allele (372)
    Strain: WBStrain00007651
    RNASeq_FPKM (74)
    GO_annotation (22)
    Ortholog: WBGene00032004 Caenorhabditis briggsae From_analysis (4)
      WBGene00144868 Caenorhabditis brenneri From_analysis (4)
      WBGene00068372 Caenorhabditis remanei From_analysis (4)
      WBGene00190509 Caenorhabditis brenneri From_analysis (2)
      WBGene00080426 Caenorhabditis remanei From_analysis (2)
      WBGene00076962 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00141264 Caenorhabditis brenneri From_analysis (2)
      WBGene00068373 Caenorhabditis remanei From_analysis (2)
      WBGene00101107 Pristionchus pacificus From_analysis (2)
      WBGene00159554 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00159619 Caenorhabditis brenneri From_analysis: WormBase-Compara
      CBOVI.g11121 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g14780 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6468 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g10764 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7477 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26898 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g16328 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8889 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g12110 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g16509 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g14031 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00943.g15054 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_07277.g20804 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-kvs-5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_IV.g15223 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_IV.g15224 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8858 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02689.g27560 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11662 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_015102 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09070 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g5788 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40073000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9559 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00263053 Strongyloides ratti From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-090831-3 Danio rerio From_analysis (5)
      ZFIN:ZDB-GENE-070912-170 Danio rerio From_analysis (4)
      ZFIN:ZDB-GENE-100922-109 Danio rerio From_analysis (5)
      ZFIN:ZDB-GENE-091113-38 Danio rerio From_analysis (3)
      ZFIN:ZDB-GENE-091117-27 Danio rerio From_analysis (5)
      ZFIN:ZDB-GENE-060526-28 Danio rerio From_analysis (5)
      HGNC:6231 Homo sapiens From_analysis (4)
      HGNC:6246 Homo sapiens From_analysis (5)
      HGNC:6232 Homo sapiens From_analysis (4)
      HGNC:18861 Homo sapiens From_analysis (3)
      MGI:96666 Mus musculus From_analysis (5)
      MGI:99632 Mus musculus From_analysis (4)
      RGD:2954 Rattus norvegicus From_analysis (5)
      RGD:621264 Rattus norvegicus From_analysis (3)
      RGD:621349 Rattus norvegicus From_analysis (4)
    Paralog (13)
    Structured_description: Automated_description: Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Located in plasma membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 26. Is an ortholog of human KCNF1 (potassium voltage-gated channel modifier subfamily F member 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0080461 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:6231)
      DOID:1826 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:6231)
  Molecular_info: Corresponding_CDS: Y55F3C.3a
      Y55F3C.3c
      Y55F3C.3d
      Y55F3C.3e
      Y55F3C.3f
      Y55F3C.3g
    Corresponding_CDS_history: Y55F3C.3:wp175
      Y55F3C.3b:wp274
    Corresponding_transcript: Y55F3C.3a.1
      Y55F3C.3c.1
      Y55F3C.3d.1
      Y55F3C.3e.1
      Y55F3C.3f.1
      Y55F3C.3g.1
    Other_sequence (19)
    Associated_feature (27)
  Experimental_info: RNAi_result: WBRNAi00021056 Inferred_automatically: RNAi_primary
      WBRNAi00002374 Inferred_automatically: RNAi_primary
      WBRNAi00057555 Inferred_automatically: RNAi_primary
      WBRNAi00021057 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9462
      Expr1016026
      Expr1017500
      Expr1039655
      Expr1160988
      Expr1160989
      Expr2012988
      Expr2031220
    Drives_construct: WBCnstr00024396
    Construct_product: WBCnstr00014027
      WBCnstr00024396
    Microarray_results (44)
    Expression_cluster (195)
    Interaction: WBInteraction000112836
      WBInteraction000112839
      WBInteraction000112840
      WBInteraction000162561
      WBInteraction000167519
      WBInteraction000170122
      WBInteraction000293558
      WBInteraction000469834
      WBInteraction000472696
  Map_info: Map: IV Position: -23.571 Error: 0.008513
    Positive: Positive_clone: Y55F3C Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038444
    WBPaper00038491
    WBPaper00055090
    WBPaper00064898
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene