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WormBase Tree Display for Gene: WBGene00019537

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Name Class

WBGene00019537SMapS_parentSequenceK08D12
IdentityVersion1
NameSequence_nameK08D12.3
Molecular_nameK08D12.3a
K08D12.3a.1
CE21045
K08D12.3b
CE31712
K08D12.3b.1
Other_nameCELE_K08D12.3Accession_evidenceNDBBX284604
Public_nameK08D12.3
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:01WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (16)
StrainWBStrain00001457
RNASeq_FPKM (74)
GO_annotation00084727
00084728
00084729
00084730
00084731
00084732
00084733
00124374
00124375
OrthologWBGene00034335Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00142707Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00131465Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00071274Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00225171Brugia malayiFrom_analysisWormBase-Compara
CSP21.g9915Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8363Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12692Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g570Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g16174Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15277Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14395Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19915Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4326Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00048.g2534Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-K08D12.3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10589Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00166.g6099Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_12123Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016167Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12417Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5098Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40030200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g9721Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00305021Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00255912Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00300054Trichuris murisFrom_analysisWormBase-Compara
SGD:S000005199Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
SonicParanoid
FB:FBgn0034802Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-030131-5045Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
ZFIN:ZDB-GENE-030131-7782Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
HGNC:13164Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
Panther
HGNC:31749Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
MGI:88431Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
Panther
SonicParanoid
MGI:1922314Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
SonicParanoid
RGD:621807Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
SonicParanoid
RGD:1589760Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
Panther
SonicParanoid
ParalogWBGene00017210Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionK08D12.3 is orthologous to human ZNF9 (CNBP; OMIM:116955, mutated in myotonic dystrophy type 2) and ZCCHC13; like ZNF9, K08D12.3 is most conspicuously expressed in muscle cells; K08D12.3 is required for normal locomotion in mass RNAi assays, as well as for fertility, embryonic and larval viability, and general health.Paper_evidenceWBPaper00005654
WBPaper00006395
WBPaper00006510
WBPaper00006525
WBPaper00024925
WBPaper00025054
WBPaper00030851
Curator_confirmedWBPerson1823
WBPerson567
Date_last_updated20 Jul 2007 00:00:00
Automated_descriptionPredicted to enable mRNA binding activity; single-stranded RNA binding activity; and translation regulator activity. Predicted to be involved in positive regulation of cytoplasmic translation. Predicted to be located in cytoplasm. Expressed in head muscle and pharyngeal muscle cell. Human ortholog(s) of this gene implicated in myotonic dystrophy type 2. Is an ortholog of human ZCCHC13 (zinc finger CCHC-type containing 13).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050759Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:13164)
Molecular_infoCorresponding_CDS (2)
Corresponding_transcriptK08D12.3a.1
K08D12.3b.1
Other_sequence (82)
Associated_featureWBsf047615
WBsf659926
WBsf977050
WBsf977051
WBsf977052
WBsf981676
WBsf227970
Experimental_infoRNAi_result (12)
Expr_patternChronogram881
Expr6360
Expr11587
Expr1022204
Expr1038442
Expr1153959
Expr2004904
Expr2023127
Drives_constructWBCnstr00002335
WBCnstr00019073
Microarray_results (32)
Expression_cluster (161)
Interaction (123)
Map_infoPositivePositive_cloneK08D12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV-16.1637
ReferenceWBPaper00038491
WBPaper00044833
WBPaper00055090
MethodGene