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WormBase Tree Display for Gene: WBGene00019126

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Name Class

WBGene00019126SMapS_parentSequenceF59E12
IdentityVersion3
NameCGC_namesam-4Paper_evidenceWBPaper00045884
Person_evidenceWBPerson451
Sequence_nameF59E12.11
Molecular_nameF59E12.11
F59E12.11.1
CE28570
F59E12.11.2
Other_nameF59E12.dCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
F59E12.cCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
F59E12.nCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_F59E12.11Accession_evidenceNDBBX284602
Public_namesam-4
DB_infoDatabaseAceViewgene2F938
WormQTLgeneWBGene00019126
WormFluxgeneWBGene00019126
NDBlocus_tagCELE_F59E12.11
PanthergeneCAEEL|EnsemblGenome=WBGene00019126|UniProtKB=O01902
familyPTHR31634
NCBIgene173955
RefSeqproteinNM_001381430.3
TREEFAMTREEFAM_IDTF316379
TrEMBLUniProtAccO01902
UniProt_GCRPUniProtAccO01902
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:01WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
212 Nov 2014 15:10:23WBPerson2970Name_changeCGC_namesam-4
306 Mar 2018 14:46:54WBPerson4025EventSplit_intoWBGene00302971
Split_intoWBGene00302971
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsam
Allele (24)
RNASeq_FPKM (74)
GO_annotation (16)
Contained_in_operon (2)
OrthologWBGene00025509Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00057318Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00123941Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00191118Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00193350Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00224859Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6808Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4088Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5464Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g15067Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12285Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g23553Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g11292Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g5183Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g25579Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g5881Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7095Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_11939.g23487Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-sam-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11359Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00331.g9562Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04379Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006081Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g10138Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20112500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4569Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00217511Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00304417Pristionchus pacificusFrom_analysisWormBase-Compara
FB:FBgn0030346Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-041010-83Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
HGNC:17950Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:1915024Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
RGD:1307624Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
Structured_descriptionConcise_descriptionsam-4 encodes a novel protein orthologous to human LOH12CR1, deletions of which have been associated with acute lymphoblastic leukemia; SAM-4 activity is required cell autonomously to maintain synaptic vesicle transport processivity; in regulating synaptic vesicle tranport, SAM-4 functions together with the UNC-104 kinesin motor protein and SYD-2/liprin-alpha; SAM-4 is broadly expressed in the nervous system where it localizes primarily to the anterior nerve ring and, subcellularly, to synaptic vesicle membranes.Paper_evidenceWBPaper00045884
Curator_confirmedWBPerson1843
Date_last_updated12 Dec 2014 00:00:00
Automated_descriptionEnables guanyl-nucleotide exchange factor activity. Involved in several processes, including multicellular organismal reproductive process; positive regulation of anterograde synaptic vesicle transport; and positive regulation of pharyngeal pumping. Located in synaptic vesicle membrane. Expressed in nerve ring. Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Is an ortholog of human BORCS5 (BLOC-1 related complex subunit 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050861Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17950)
Molecular_infoCorresponding_CDSF59E12.11
Corresponding_CDS_historyF59E12.11a:wp264
F59E12.11b:wp264
Corresponding_transcriptF59E12.11.1
F59E12.11.2
Corresponding_transcript_historyF59E12.11c:wp264
Other_sequenceEY463123.1
CJC12832_1
CBC16884_1
Associated_featureWBsf650074
WBsf650075
WBsf650076
WBsf223077
Experimental_infoRNAi_result (20)
Expr_patternExpr12013
Expr1010547
Expr1038256
Expr1152947
Expr2015584
Expr2033819
Drives_constructWBCnstr00019746
WBCnstr00019749
WBCnstr00026043
Construct_productWBCnstr00019745
WBCnstr00019746
WBCnstr00019747
WBCnstr00019749
WBCnstr00026043
Microarray_results (19)
Expression_cluster (97)
Interaction (44)
Map_infoMapIIPosition-0.993749
PositivePositive_cloneF59E12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00035228
WBPaper00038491
WBPaper00045884
WBPaper00052655
WBPaper00052935
WBPaper00055090
WBPaper00064980
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene