WormBase Tree Display for Gene: WBGene00012117
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WBGene00012117 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | T28B11.1 | |||||||
Molecular_name | T28B11.1a | ||||||||
T28B11.1a.1 | |||||||||
CE14335 | |||||||||
T28B11.1b | |||||||||
CE47990 | |||||||||
T28B11.1a.2 | |||||||||
T28B11.1b.1 | |||||||||
Other_name | CELE_T28B11.1 | Accession_evidence | NDB | BX284605 | |||||
Public_name | T28B11.1 | ||||||||
DB_info | Database | AceView | gene | 5L194 | |||||
WormQTL | gene | WBGene00012117 | |||||||
WormFlux | gene | WBGene00012117 | |||||||
NDB | locus_tag | CELE_T28B11.1 | |||||||
NCBI | gene | 179487 | |||||||
RefSeq | protein | NM_073334.8 | |||||||
NM_001276928.3 | |||||||||
TrEMBL | UniProtAcc | K8F7S4 | |||||||
Q22842 | |||||||||
UniProt_GCRP | UniProtAcc | Q22842 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (304) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00031228 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00147085 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00065013 | Caenorhabditis remanei | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00128463 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
WBGene00231400 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CBOVI.g482 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g6484 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g10325 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g8538 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g17636 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g1084 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g9541 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g1676 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g24360 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g1525 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-T28B11.1 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g15547 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00391.g10632 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_24051 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_016469 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_50298610 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrV_pilon.g15585 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00243288 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00108524 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | T28B11.1 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp1 or with other proteins; about 5% to 15% of T28B11.1 transcripts are RNA edited to change A to G resulting in a change to residue 369 from an K to a E. | Paper_evidence | WBPaper00012854 | |||||
WBPaper00045975 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
WBPerson4025 | |||||||||
Date_last_updated | 29 Dec 2014 00:00:00 | ||||||||
Automated_description | Enriched in coelomocyte; germ line; mc3; neurons; and ventral nerve cord based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-12; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by fifteen chemicals including Cry5B; Zidovudine; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; F-box-like domain superfamily; and Phosphorylation site. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result | WBRNAi00019378 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00054377 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1016789 | ||||||||
Expr1035354 | |||||||||
Expr1157925 | |||||||||
Expr2006596 | |||||||||
Expr2024813 | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (190) | |||||||||
Interaction | WBInteraction000238924 | ||||||||
WBInteraction000246544 | |||||||||
WBInteraction000340564 | |||||||||
WBInteraction000393246 | |||||||||
WBInteraction000461689 | |||||||||
WBInteraction000570159 | |||||||||
Map_info | Positive | Positive_clone | T28B11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | V | 2.74512 | |||||||
Reference | WBPaper00012854 | ||||||||
Method | Gene |