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WormBase Tree Display for Gene: WBGene00009813

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Name Class

WBGene00009813SMapS_parentSequenceF47B10
IdentityVersion2
NameCGC_namehaly-1Paper_evidenceWBPaper00038278
Person_evidenceWBPerson341
Sequence_nameF47B10.2
Molecular_nameF47B10.2
F47B10.2.1
CE03352
Other_nameCELE_F47B10.2Accession_evidenceNDBBX284606
Public_namehaly-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
212 Apr 2011 11:48:32WBPerson2970Name_changeCGC_namehaly-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhaly
Allele (44)
StrainWBStrain00040582
WBStrain00040583
RNASeq_FPKM (74)
GO_annotation (13)
OrthologWBGene00037154Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00058394Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00141004Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00134553Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g2995Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10852Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g14393Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14422Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15939Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25221Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2109Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13776Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g2751Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19923Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_03926.g18483Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-haly-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13827Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00025.g1490Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01239Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023663Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02636Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5699Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0078000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19967Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00282174Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00265194Strongyloides rattiFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-070410-5Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:4806Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:96010Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:68363Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptionhaly-1 encodes a histidine ammonia lyase orthologous to the human gene HISTIDASE (HAL; OMIM:235800); HALY-1 is required in C. elegans for conversion of histidine to urocanic acid via reductive deamination; loss-of-function mutations in haly-1 result in protection against zinc and nickel toxicity owing to increased levels of metal-chelating histidine; genetic studies suggest that haly-1 functions in parallel to members of the cation diffusion facilitator family of zinc transporters encodes by cdf-1, cdf-2, and sur-7 to modulate zinc sensitivity; haly-1 mRNA levels do not vary under different dietary zinc conditions.Paper_evidenceWBPaper00031911
WBPaper00038278
Curator_confirmedWBPerson1843
WBPerson1823
WBPerson567
Date_last_updated04 Apr 2011 00:00:00
Automated_descriptionPredicted to enable histidine ammonia-lyase activity. Involved in histidine catabolic process. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in histidinemia. Is an ortholog of human HAL (histidine ammonia-lyase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0060168Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4806)
Molecular_info (4)
Experimental_infoRNAi_resultWBRNAi00015146Inferred_automaticallyRNAi_primary
WBRNAi00047595Inferred_automaticallyRNAi_primary
WBRNAi00032403Inferred_automaticallyRNAi_primary
Expr_patternChronogram1244
Expr6096
Expr1025610
Expr1034288
Expr1151431
Expr2012363
Expr2030599
Drives_constructWBCnstr00003174
WBCnstr00020173
WBCnstr00031899
Construct_productWBCnstr00020173
WBCnstr00031899
Microarray_results (22)
Expression_cluster (225)
Interaction (19)
Map_infoMapXPosition2.67922
PositivePositive_cloneF47B10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (10)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene