WormBase Tree Display for Gene: WBGene00009560

WBGene00009560 SMap: S_parent: Sequence: F39D8
  Identity: Version: 2
    Name: CGC_name: psa-3 Person_evidence: WBPerson3204
      Sequence_name: F39D8.2
      Molecular_name (12)
      Other_name: CELE_F39D8.2 Accession_evidence: NDB BX284606
      Public_name: psa-3
    DB_info: Database: WormQTL gene WBGene00009560
        WormFlux gene WBGene00009560
        NDB locus_tag CELE_F39D8.2
        Panther gene CAEEL|WormBase=WBGene00009560|UniProtKB=Q0G825
          family PTHR11850
        NCBI gene 181631
        RefSeq protein NM_001313418.3
            NM_001270334.3
            NM_001083296.5
            NM_001083297.5
        SwissProt UniProtAcc Q0G825
        UniProt_GCRP UniProtAcc Q0G825
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Jul 2005 13:25:29 WBPerson2970 Name_change: CGC_name: psa-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: psa
    Allele (210)
    Strain: WBStrain00008466
    RNASeq_FPKM (74)
    GO_annotation: 00055778
      00055779
      00055780
      00055781
      00055782
      00055783
    Ortholog: WBGene00058641 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00029659 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00192947 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g2460 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12050 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16193 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g20885 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g23129 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g13800 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g17933 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP40.g8871 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00110.g4578 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-psa-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold558.g3832 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00115.g4720 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01779 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_025542 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07030 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_X0134310 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g20745 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00125859 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Concise_description: psa-3 encodes a Meis-related protein; along with nob-1 and ceh-20, psa-3 is required for the proper asymmetric cell division of the T hypodermal cell; a PSA-3::GFP reporter fusino is expressed in the T hypodermal cell, head neurons, posterior gut cells, hypodermal cells (hyp7, hyp9, and hyp10), and the P blast cells; psa-3 expression is regulated by the POP-1 TCF transcription factor, as well as CEH-20/Pbx and the NOB-1 homeodomain protein; PSA-3 physically interacts with CEH-20 and regulates its nuclear localization. Paper_evidence: WBPaper00027741
          Curator_confirmed: WBPerson1843
          Date_last_updated: 15 Feb 2014 00:00:00
      Automated_description: Enables transcription coactivator binding activity. Involved in regulation of asymmetric cell division. Located in nucleus. Expressed in several structures, including TL.aa; TL.pa; TR.aa; TR.pa; and hypodermal cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS (4)
    Corresponding_CDS_history: F39D8.2:wp102
      F39D8.2:wp163
      F39D8.2a:wp246
    Corresponding_transcript: F39D8.2a.1
      F39D8.2b.1
      F39D8.2c.1
      F39D8.2d.1
    Other_sequence: Tcol_isotig16426
    Associated_feature (13)
  Experimental_info: RNAi_result: WBRNAi00083965 Inferred_automatically: RNAi_primary
      WBRNAi00046770 Inferred_automatically: RNAi_primary
      WBRNAi00023225 Inferred_automatically: RNAi_primary
      WBRNAi00023737 Inferred_automatically: RNAi_primary
      WBRNAi00014598 Inferred_automatically: RNAi_primary
      WBRNAi00031986 Inferred_automatically: RNAi_primary
      WBRNAi00024023 Inferred_automatically: RNAi_primary
      WBRNAi00023460 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4287
      Expr9858
      Expr1017410
      Expr1034181
      Expr1150644
      Expr2015130
      Expr2033368
    Drives_construct: WBCnstr00009746
      WBCnstr00032104
    Construct_product: WBCnstr00009746
      WBCnstr00032104
    Microarray_results (26)
    Expression_cluster (112)
    Interaction (11)
    WBProcess: WBbiopr:00000073
  Map_info: Map: X Position: 22.5924 Error: 0.030916
    Positive: Positive_clone: F39D8 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5395
        5655
    Pseudo_map_position
  Reference: WBPaper00010125
    WBPaper00010126
    WBPaper00011974
    WBPaper00027741
    WBPaper00030889
    WBPaper00044833
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene