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WormBase Tree Display for Gene: WBGene00007848

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Name Class

WBGene00007848SMapS_parentSequenceC31E10
IdentityVersion2
NameCGC_namecytb-5.1Person_evidenceWBPerson681
Sequence_nameC31E10.7
Molecular_nameC31E10.7
C31E10.7.1
CE37487
Other_namecytochrome b5Paper_evidenceWBPaper00040883
CELE_C31E10.7Accession_evidenceNDBBX284606
Public_namecytb-5.1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcytb
Allele (24)
RNASeq_FPKM (74)
GO_annotation00085658
00085659
00085660
00085661
00085662
00085663
00085664
00085665
OrthologWBGene00066964Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00029403Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00140251Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00127220Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00055240Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00120591Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00060609Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00157788Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00157411Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00160732Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00084189Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00163624Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00150172Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00215951Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00222758Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3682Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7892Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g9828Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10728Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20845Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g19094Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9779Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g16481Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g27600Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g11003Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00350.g9587Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cytb-5.1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g22081Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00431.g11276Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01513Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_025813Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01234Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21037Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0116400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20509Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00239793Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00263715Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00299580Trichuris murisFrom_analysisWormBase-Compara
SGD:S000005055Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
Panther
SonicParanoid
FB:FBgn0264294Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-040426-2614Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-040426-2148Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoInspector
Panther
SonicParanoid
HGNC:2570Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoInspector
Panther
SonicParanoid
HGNC:24374Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
SonicParanoid
MGI:1913677Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
SonicParanoid
MGI:1926952Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoInspector
Panther
SonicParanoid
RGD:620558Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoInspector
Panther
SonicParanoid
RGD:621551Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
SonicParanoid
ParalogWBGene00010235Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00014300Caenorhabditis elegansFrom_analysisPanther
WBGene00020931Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptioncytb-5.1 encodes a protein orthologous to cytochrome b5; a CYTB-5.1 reporter fusion protein, when expressed in the distal tip cell, exhibits perinuclear localization, consistent with localization to the endoplasmic reticulum.Paper_evidenceWBPaper00040883
Curator_confirmedWBPerson1843
WBPerson1823
WBPerson567
Date_last_updated16 Mar 2012 00:00:00
Automated_descriptionPredicted to enable heme binding activity. Located in perinuclear region of cytoplasm. Used to study hematopoietic system disease. Human ortholog(s) of this gene implicated in methemoglobinemia; methemoglobinemia and ambiguous genitalia; and stomatitis. Is an ortholog of human CYB5A (cytochrome b5 type A) and CYB5B (cytochrome b5 type B).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:74Homo sapiensPaper_evidenceWBPaper00053474
Curator_confirmedWBPerson324
Date_last_updated09 May 2023 00:00:00
Potential_modelDOID:0112316Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2570)
DOID:10783Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2570)
DOID:9637Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2570)
Models_disease_in_annotationWBDOannot00000049
Molecular_infoCorresponding_CDSC31E10.7
Corresponding_CDS_historyC31E10.7:wp132
Corresponding_transcriptC31E10.7.1
Other_sequence (80)
Associated_featureWBsf648705
WBsf655229
WBsf663528
WBsf1007797
WBsf1024340
WBsf236630
WBsf236631
WBsf236632
Experimental_infoRNAi_resultWBRNAi00033345Inferred_automaticallyRNAi_primary
WBRNAi00024689Inferred_automaticallyRNAi_primary
WBRNAi00071638Inferred_automaticallyRNAi_primary
WBRNAi00111894Inferred_automaticallyRNAi_primary
WBRNAi00008470Inferred_automaticallyRNAi_primary
WBRNAi00105933Inferred_automaticallyRNAi_primary
WBRNAi00071637Inferred_automaticallyRNAi_primary
WBRNAi00041615Inferred_automaticallyRNAi_primary
WBRNAi00088736Inferred_automaticallyRNAi_primary
WBRNAi00088629Inferred_automaticallyRNAi_primary
Expr_patternExpr13447
Expr1024592
Expr1033402
Expr1145640
Expr2010751
Expr2028988
Drives_constructWBCnstr00033436
Construct_productWBCnstr00000237
WBCnstr00033436
WBCnstr00040361
Microarray_results (20)
Expression_cluster (180)
Interaction (55)
Map_infoMapXPosition15.9609
PositivePositive_cloneC31E10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00034497
WBPaper00034498
WBPaper00038491
WBPaper00040883
WBPaper00053474
WBPaper00055090
WBPaper00060223
WBPaper00061328
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene