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WormBase Tree Display for Gene: WBGene00006890

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Name Class

WBGene00006890EvidenceCGC_data_submission
SMapS_parentSequenceK07E3
IdentityVersion1
NameCGC_namevem-1Person_evidenceWBPerson1835
Sequence_nameK07E3.8
Molecular_name (3)
Other_nameCELE_K07E3.8Accession_evidenceNDBBX284606
Public_namevem-1
DB_infoDatabaseAceViewgeneXI706
WormQTLgeneWBGene00006890
WormFluxgeneWBGene00006890
NDBlocus_tagCELE_K07E3.8
PanthergeneCAEEL|WormBase=WBGene00006890|UniProtKB=Q7YZW5
familyPTHR10281
NCBIgene181066
RefSeqproteinNM_001029599.11
SwissProtUniProtAccQ7YZW5
UniProt_GCRPUniProtAccQ7YZW5
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:43WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvem
Allele (34)
StrainWBStrain00035774
WBStrain00035993
RNASeq_FPKM (74)
GO_annotation00082942
00082943
00082944
00082945
00082946
00082947
00082948
00082949
00082950
00082951
OrthologWBGene00051204Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00036703Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00162817Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00135921Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00104067Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00225139Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3144Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9238Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g13105Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17588Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g16111Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21699Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g4097Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g12783Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g27366Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16646Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00079.g3632Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-vem-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18868Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00286.g8707Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00034Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024900Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08235Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g22065Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0216500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19512Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00244907Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00260214Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292307Trichuris murisFrom_analysisWormBase-Compara
WBGene00296354Trichuris murisFrom_analysisWormBase-Compara
SGD:S000006091Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoInspector
Panther
SonicParanoid
FB:FBgn0030703Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
FB:FBgn0032519Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
ZFIN:ZDB-GENE-040426-2102Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-041114-91Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:16089Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
HGNC:16090Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:1858305Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:1918054Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
RGD:70890Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
RGD:1308804Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
SonicParanoid
ParalogWBGene00006478Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012559Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionvem-1 encodes a transmembrane protein that contains a cytochrome b5-like heme/steroid-binding domain and is orthologous to mammalian VEMA, a membrane-associated progesterone receptor component; in C. elegans, vem-1 is required for proper axonal guidance of ventral nerve cord neurons; vem-1 interacts genetically with unc-40, whose protein product also interacts with VEM-1; a VEM-1::GFP reporter fusion is expressed from embryonic stages through late larval stages and is found in a subset of neurons, including the AVG pioneer neurons, that extend processes into the ventral nerve cord; microarray experiments indicate that vem-1 transcripts are upregulated in response to treatment with xenobiotics such as clofibrate and beta-naphthoflavone.Paper_evidenceWBPaper00024484
WBPaper00026820
Curator_confirmedWBPerson1843
Date_last_updated26 Feb 2009 00:00:00
Automated_descriptionInvolved in innate immune response. Located in axon. Expressed in AVG; head neurons; and somatic nervous system. Is an ortholog of human PGRMC1 (progesterone receptor membrane component 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK07E3.8
Corresponding_CDS_historyK07E3.8a:wp252
Corresponding_transcriptK07E3.8.1
Other_sequence (28)
Associated_featureWBsf654188
WBsf654189
WBsf654190
WBsf654191
WBsf670808
WBsf982206
WBsf1006049
Experimental_infoRNAi_resultWBRNAi00061111Inferred_automaticallyRNAi_primary
WBRNAi00050171Inferred_automaticallyRNAi_primary
WBRNAi00061112Inferred_automaticallyRNAi_primary
WBRNAi00016735Inferred_automaticallyRNAi_primary
Expr_patternExpr3106
Expr1011310
Expr1032922
Expr1153866
Expr2017966
Expr2036102
Drives_constructWBCnstr00001989
WBCnstr00034111
Construct_productWBCnstr00034111
Microarray_results (22)
Expression_cluster (157)
Interaction (20)
Map_infoMapXPosition-0.581887Error0.008927
PositivePositive_cloneK07E3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4259
4404
4750
Pseudo_map_position
ReferenceWBPaper00018032
WBPaper00024484
WBPaper00026820
WBPaper00033099
WBPaper00038491
WBPaper00048021
WBPaper00050498
WBPaper00055090
RemarkSequence connection from [Runko E, Kaprielian Z]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene