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WormBase Tree Display for Gene: WBGene00004875

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Name Class

WBGene00004875SMapS_parentSequenceCHROMOSOME_I
IdentityVersion2
NameCGC_namesmd-1
Sequence_nameF47G4.7
Molecular_nameF47G4.7
F47G4.7.1
CE18705
F47G4.7.2
F47G4.7.3
Other_namesamdcAccession_evidenceEMBLY12499
Y12500
CELE_F47G4.7Accession_evidenceNDBBX284601
Public_namesmd-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
202 Mar 2018 10:40:21WBPerson4025EventSplit_intoWBGene00303058
Split_intoWBGene00303058
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsmd
Allele (68)
StrainWBStrain00032658
RNASeq_FPKM (74)
GO_annotation (16)
Contained_in_operonCEOP1730
OrthologWBGene00056002Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00038178Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00138889Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00094245Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00129492Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00232384Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9325Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1899Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g13931Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g19628Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10143Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g21083Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g824Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12219Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13316Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g2096Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g15619Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g15847Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00323.g9205Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-smd-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold525.g2994Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01748.g22889Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_01827.g23377Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14880Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001650Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14635Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g23806Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10053800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g2841Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237185Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00272177Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00261555Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292788Trichuris murisFrom_analysisWormBase-Compara
SGD:S000005412Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0019932Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-760Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:457Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:88004Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1333111Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:2104Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptionsmd-1 encodes an S-adenosylmethionine decarboxylase; SMD-1 functions in polyamine biosynthesis, exhibiting adenosylmethionine decarboxylase activity in vitro that is stimulated by putrescine; in large-scale RNAi screens, loss of smd-1 results in defective axon guidance and, in a sensitized genetic background, locomotion defects; smd-1::gfp reporter fusions are expressed in the intestine and in head and tail neurons; in males, there is also additional smd-1::gfp expression in ray neurons.Paper_evidenceWBPaper00005693
WBPaper00024333
WBPaper00027214
WBPaper00028984
Curator_confirmedWBPerson1843
Date_last_updated02 Dec 2010 00:00:00
Automated_descriptionEnables adenosylmethionine decarboxylase activity. Involved in spermidine biosynthetic process and spermine biosynthetic process. Predicted to be located in cytosol. Expressed in intestine and neurons. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma and prostate cancer. Is an ortholog of human AMD1 (adenosylmethionine decarboxylase 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:3908Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:457)
DOID:10283Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:457)
Molecular_infoCorresponding_CDSF47G4.7
Corresponding_CDS_historyF47G4.7a:wp264
F47G4.7b:wp264
Corresponding_transcriptF47G4.7.1
F47G4.7.2
F47G4.7.3
Corresponding_transcript_historyF47G4.7b:wp263
Other_sequence (98)
Associated_featureWBsf649732
WBsf665088
WBsf716963
WBsf986018
WBsf019243
WBsf220565
Experimental_info (8)
Map_infoMapIPosition22.9376Error0.009867
PositivePositive_cloneF47G4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00003357
WBPaper00005693
WBPaper00028984
WBPaper00035239
WBPaper00038491
WBPaper00055090
WBPaper00062707
WBPaper00064339
WBPaper00064947
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene