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WormBase Tree Display for Gene: WBGene00002982

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Name Class

WBGene00002982EvidenceCGC_data_submission
SMapS_parentSequenceB0336
IdentityVersion2
NameCGC_namelgg-3Person_evidenceWBPerson321
Sequence_nameB0336.8
Molecular_nameB0336.8
B0336.8.1
CE00776
Other_nameatg-12Paper_evidenceWBPaper00028973
Person_evidenceWBPerson649
CELE_B0336.8Accession_evidenceNDBBX284603
Public_namelgg-3
DB_infoDatabase (10)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
215 Mar 2007 08:30:58WBPerson2970Name_changeOther_nameatg-12
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgg
AlleleWBVar00250621
WBVar01500260
WBVar01500122
WBVar01500123
WBVar00829183
WBVar00829184
WBVar00829185
WBVar00275641
WBVar02053280
RNASeq_FPKM (74)
GO_annotation (16)
Contained_in_operonCEOP3324
OrthologWBGene00055614Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00030674Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00162506Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00210246Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00222024Brugia malayiFrom_analysisWormBase-Compara
CSP21.g2447Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1765Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9748Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15141Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g17713Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15981Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g3255Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17257Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9430Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6471Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00842.g14505Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lgg-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold568.g4201Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00216.g7239Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_18497Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010601Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13352Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5401Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30135400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7769Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00243321Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00092879Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00260080Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000000421Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
Panther
FB:FBgn0036255Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-071205-7Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
HGNC:588Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:1914776Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
RGD:1306306Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
Structured_descriptionConcise_descriptionlgg-3 encodes a hydrophilic protein that is orthologous to Saccharomyces cerevisiae autophagy protein Apg12p; by homology, LGG-3 is predicted to function as a modifier protein required for a protein conjugation system essential for autophagy; in the context of this conjugation system, LGG-3 is predicted to interact with Apg7p and Apg5p homologs (encoded by M7.5 and Y71G12B.12a, respectively) to effect bulk degradation of cytoplasmic components under conditions of starvation or cellular remodeling; free LGG-3 is predicted to localize to the cytoplasm, while LGG-3 conjugated to the Apg5p homolog is predicted to associate with membrane compartments; loss of lgg-3 activity via large-scale RNAi screens results in no obvious developmental or behavioral abnormalities.Paper_evidenceWBPaper00004403
WBPaper00005654
WBPaper00013631
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionInvolved in cellular response to toxic substance; determination of adult lifespan; and xenophagy. Acts upstream of or within with a positive effect on plasma membrane repair. Located in autophagosome membrane. Is an ortholog of human ATG12 (autophagy related 12).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSB0336.8
Corresponding_transcriptB0336.8.1
Associated_featureWBsf651070
WBsf655435
Experimental_infoRNAi_result (34)
Expr_patternExpr1014494
Expr1031382
Expr1143130
Expr2013144
Expr2031376
Drives_constructWBCnstr00036307
Construct_productWBCnstr00036307
AntibodyWBAntibody00002571
Microarray_results (16)
Expression_cluster (105)
Interaction (26)
Map_infoMapIIIPosition-1.45276Error0.000601
PositivePositive_cloneB0336Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (17)
RemarkSequence connection from [Kimura Y]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene