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WormBase Tree Display for Gene: WBGene00002019

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Name Class

WBGene00002019SMapS_parentSequenceT27E4
IdentityVersion1
NameCGC_namehsp-16.48Person_evidenceWBPerson36
Sequence_nameT27E4.3
Molecular_nameT27E4.3
T27E4.3.1
CE14251
Other_namehsp-16
CELE_T27E4.3Accession_evidenceNDBBX284605
Public_namehsp-16.48
DB_infoDatabase (10)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:26WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhsp
AlleleWBVar01499903
WBVar01500129
WBVar00091863
WBVar01499419
WBVar01499420
WBVar01499056
WBVar01499249
WBVar01499316
StrainWBStrain00030548
WBStrain00030720
WBStrain00030838
WBStrain00031504
WBStrain00034987
In_clusterHSP16A
RNASeq_FPKM (74)
GO_annotation00038768
00038769
00038770
00038771
00038772
00105672
00105748
00106138
00106139
OrthologWBGene00038448Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00027246Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00027234Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00052625Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00091037Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00101796Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00101797Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00140961Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00149500Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00151214Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00154236Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00155603Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00124823Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00126654Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00073755Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00073752Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00068608Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00068605Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00226306Brugia malayiFrom_analysisWormBase-Compara
WBGene00226851Brugia malayiFrom_analysisWormBase-Compara
WBGene00236790Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12732Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g12776Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g12783Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g12785Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2043Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g15082Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g5545Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g5547Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4574Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g5092Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17962Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g18638Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g5549Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g10286Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g14653Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g14657Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g14875Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g16154Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g6663Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g22417Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g23489Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g8365Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g8373Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17873Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g21397Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g23637Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_V.g20090Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g20092Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g20529Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g20543Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold575.g4426Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g16839Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19838Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00279.g8578Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_01089.g18311Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_06367.g36441Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_24822Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018404Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_10087200Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50235600Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50235800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50329000Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50329200Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50329800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50330100Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50355400Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50359400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15162Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00236859Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00257141Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00257259Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00258086Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00261172Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00265225Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00265337Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288111Trichuris murisFrom_analysisWormBase-Compara
WBGene00289300Trichuris murisFrom_analysisWormBase-Compara
WBGene00294628Trichuris murisFrom_analysisWormBase-Compara
WBGene00294630Trichuris murisFrom_analysisWormBase-Compara
WBGene00296278Trichuris murisFrom_analysisWormBase-Compara
WBGene00296279Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0011296Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
FB:FBgn0001229Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
FB:FBgn0001227Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
FB:FBgn0001224Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
Panther
FB:FBgn0001223Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
Panther
ZFIN:ZDB-GENE-020508-1Danio rerioFrom_analysisEnsEMBL-Compara
OMA
Panther
HGNC:2388Homo sapiensFrom_analysisEnsEMBL-Compara
OMA
Panther
HGNC:CRYAA2Homo sapiensFrom_analysisEnsEMBL-Compara
OMA
Panther
RGD:2413Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
Paralog (17)
Structured_descriptionConcise_descriptionhsp-16.48 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; an hsp-16.48 reporter fusion, expressed broadly but most strongly in body muscle and hypodermis, is induced solely in response to heat shock or other environmental stresses; expression is detectable in somatic tissues in post-gastrulation embryos, all larval stages, and in adults; HSP-16.48 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating.Paper_evidenceWBPaper00001187
WBPaper00001497
WBPaper00004424
WBPaper00013029
WBPaper00013239
WBPaper00013280
Curator_confirmedWBPerson1843
Date_last_updated05 Nov 2004 00:00:00
Automated_descriptionPredicted to enable unfolded protein binding activity. Involved in determination of adult lifespan and response to heat. Predicted to be located in cytoplasm and nucleus. Expressed in several structures, including coelomocyte; enteric muscle; intestine; nervous system; and pharynx. Human ortholog(s) of this gene implicated in cataract 9 multiple types. Is an ortholog of human CRYAA (crystallin alpha A).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0110266Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2388)
Molecular_infoCorresponding_CDST27E4.3
Corresponding_transcriptT27E4.3.1
Other_sequence (31)
Associated_featureWBsf977960
WBsf977961
WBsf977963
WBsf232205
Experimental_infoRNAi_resultWBRNAi00093732Inferred_automaticallyRNAi_primary
WBRNAi00063167Inferred_automaticallyRNAi_primary
WBRNAi00106385Inferred_automaticallyRNAi_primary
WBRNAi00106384Inferred_automaticallyRNAi_primary
WBRNAi00027602Inferred_automaticallyRNAi_primary
Expr_pattern (8)
Drives_construct (24)
Construct_productWBCnstr00010254
WBCnstr00016623
WBCnstr00016624
WBCnstr00019264
WBCnstr00036517
WBCnstr00042210
AntibodyWBAntibody00001859
Microarray_results (21)
Expression_cluster (249)
Interaction (40)
Map_infoMapVPosition1.92471Error0.000457
PositivePositive_cloneT27E4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4419
Pseudo_map_position
Reference (72)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene