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WormBase Tree Display for Gene: WBGene00001887

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Name Class

WBGene00001887SMapS_parentSequenceZK131
IdentityVersion1
NameCGC_namehis-13Person_evidenceWBPerson160
Sequence_nameZK131.7
Molecular_nameZK131.7
ZK131.7.1
CE03253
Other_nameCELE_ZK131.7Accession_evidenceNDBBX284602
Public_namehis-13
DB_infoDatabaseAceViewgene2O111
WormFluxgeneWBGene00001887
NDBlocus_tagCELE_ZK131.7
NCBIgene191672
RefSeqproteinNM_064489.1
SwissProtUniProtAccP08898
UniProt_GCRPUniProtAccP08898
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:26WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhis
AlleleWBVar01499702
WBVar01498435
WBVar01498941
Legacy_information[C.elegansII] NMK. Histone type H3. HIS3 cluster. [Roberts et al. 1989; EM]
In_clusterHIS3_cluster
RNASeq_FPKM (74)
GO_annotation00109575
00109576
00109577
00109578
OrthologWBGene00024730Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00028396Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00142571Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00157068Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00190484Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00149514Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00191890Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00141754Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00140466Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00079888Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00079890Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00080192Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00068702Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00068735Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00041799Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00223686Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4899Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g4979Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g13608Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g14148Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g14598Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g14605Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g14617Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g18810Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g21470Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g2173Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g2179Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g9292Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g11976Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g13133Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g2031Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g2034Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6956Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP31.g10203Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13602Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g7066Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g7193Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g7233Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g8476Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g11031Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g14342Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10483Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00440.g10890Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_20677.g26510Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g13781Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14830Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15388Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g21158Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g21184Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00060.g2916Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_01864.g23579Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03328.g29828Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_08077.g38404Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_13163.g40807Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_013916Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_013950Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14932Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_30253800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40065600Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50115300Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50366400Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50371100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g6424Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00213572Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00244700Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00110455Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00286174Trichuris murisFrom_analysisWormBase-Compara
WBGene00286307Trichuris murisFrom_analysisWormBase-Compara
WBGene00298431Trichuris murisFrom_analysisWormBase-Compara
WBGene00299712Trichuris murisFrom_analysisWormBase-Compara
WBGene00299713Trichuris murisFrom_analysisWormBase-Compara
WBGene00300518Trichuris murisFrom_analysisWormBase-Compara
WBGene00300522Trichuris murisFrom_analysisWormBase-Compara
WBGene00300595Trichuris murisFrom_analysisWormBase-Compara
WBGene00302527Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000214Saccharomyces cerevisiaeFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
SGD:S000004976Saccharomyces cerevisiaeFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0051613Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053836Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053842Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053815Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053830Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053806Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053839Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053803Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053809Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053863Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053866Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053854Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053818Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053857Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053821Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053824Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053845Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053812Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053860Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053851Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053833Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053827Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053848Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-030722-8Danio rerioFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-070424-8Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-050626-58Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-080220-24Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-070410-87Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-131127-42Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-131127-56Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-131121-61Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-121214-143Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-160113-117Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4778Homo sapiensFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
PhylomeDB
HGNC:4766Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4767Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4768Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4769Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4771Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4772Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4774Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4775Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4776Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4773Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:20503Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
HGNC:20505Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
HGNC:32060Homo sapiensFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
HGNC:25311Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448355Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448357Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2145541Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2448329Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448320Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448322Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448319Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448326Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448349Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2448350Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2448351Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2668828Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1311554Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1306445Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
RGD:1598076Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1591702Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1586732Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
RGD:7725170Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
RGD:7709329Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
Paralog (22)
Structured_descriptionConcise_descriptionhis-13 encodes an H3 histone; his-13 is contained within the histone gene cluster HIS3.Paper_evidenceWBPaper00001150
Curator_confirmed (2)
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome. Is an ortholog of several human genes including H3C1 (H3 clustered histone 1); H3C3 (H3 clustered histone 3); and H3C4 (H3 clustered histone 4).Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK131.7
Corresponding_transcriptZK131.7.1
Other_sequenceDviv_isotig00246
FG354250.1
Dviv_isotig00243
SSC01579_1
SS03303
Associated_featureWBsf222395
Experimental_infoRNAi_result (12)
Expr_patternExpr7195
Expr1162655
Drives_constructWBCnstr00003907
WBCnstr00036624
Construct_productWBCnstr00036624
AntibodyWBAntibody00000455
WBAntibody00000456
WBAntibody00000457
WBAntibody00000458
Microarray_results (30)
Expression_cluster (99)
Interaction (179)
Map_infoMapIIPosition20.3
PositivePositive_cloneZK131Inferred_automaticallyFrom sequence, transcript, pseudogene data
ZK831
Pseudo_map_position
Reference (8)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene