WormBase Tree Display for Gene: WBGene00001711

WBGene00001711 Evidence: Paper_evidence: WBPaper00003717
  SMap: S_parent: Sequence: T16G1
  Identity: Version: 1
    Name (5)
    DB_info: Database: AceView gene 5N425
        WormQTL gene WBGene00001711
        WormFlux gene WBGene00001711
        NDB locus_tag CELE_T16G1.8
        Panther gene CAEEL|WormBase=WBGene00001711|UniProtKB=Q9XUP5
          family PTHR23261
        NCBI gene 179777
        RefSeq protein NM_073837.5
        TREEFAM TREEFAM_ID TF316573
        TrEMBL UniProtAcc Q9XUP5
        UniProt_GCRP UniProtAcc Q9XUP5
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:25 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: grl
    Allele (32)
    Strain: WBStrain00032742
    RNASeq_FPKM (74)
    Ortholog: WBGene00059030 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00031066 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00147984 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00122542 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00226071 Brugia malayi From_analysis: WormBase-Compara
      CSP26.g20098 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g3112 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g5772 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g18640 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17540 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g8123 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g9483 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-grl-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10792 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00409.g10949 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_07692 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017646 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g19612 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50276300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g16139 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00244046 Onchocerca volvulus From_analysis: WormBase-Compara
    Paralog (32)
    Structured_description: Concise_description: grl-2 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central proline-rich low-complexity region, and a C-terminalGround-like (Grl) domain; GRL-2 is expressed in neurons, amphid socketcells, and other cells; the Grl domain is predicted to form acysteine-crosslinked protein involved in intercellular signalling, andit has subtle similarity to the N-terminal Hedge domain of HEDGEHOGproteins. Paper_evidence: WBPaper00003717
            WBPaper00006525
            WBPaper00026841
            WBPaper00027263
          Curator_confirmed: WBPerson567
          Date_last_updated: 05 Nov 2006 00:00:00
      Automated_description: Expressed in head. Is predicted to encode a protein with the following domain: Ground-like domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T16G1.8
    Corresponding_transcript: T16G1.8.1
    Other_sequence: Acan_isotig20773
      OF01472
      OFC01293_1
      PPC16416_1
      Dviv_isotig26866
    Associated_feature: WBsf661946
      WBsf232718
  Experimental_info: RNAi_result: WBRNAi00018774 Inferred_automatically: RNAi_primary
      WBRNAi00035615 Inferred_automatically: RNAi_primary
      WBRNAi00053418 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4441
      Expr6701
      Expr1013222
      Expr1031024
      Expr1156993
      Expr2012265
      Expr2030501
    Drives_construct: WBCnstr00003017
      WBCnstr00012005
      WBCnstr00036749
    Construct_product: WBCnstr00036749
    Microarray_results (20)
    Expression_cluster (141)
    Interaction: WBInteraction000227263
      WBInteraction000335920
      WBInteraction000381008
      WBInteraction000431470
      WBInteraction000447704
      WBInteraction000448991
      WBInteraction000465586
  Map_info: Map: V Position: 4.74272 Error: 0.001987
    Positive: Positive_clone: T16G1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003717
    WBPaper00028754
    WBPaper00031588
    WBPaper00052629
    WBPaper00064105
  Remark: ground-like gene, contains ground-like domain, hedgehog-related Paper_evidence: WBPaper00003717
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene