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WormBase Tree Display for Gene: WBGene00001399

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Name Class

WBGene00001399SMapS_parentSequenceF10D2
IdentityVersion1
Name (5)
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:24WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfat
Allele (42)
StrainWBStrain00004020
WBStrain00004021
WBStrain00004022
WBStrain00008410
WBStrain00008411
RNASeq_FPKM (74)
GO_annotation (21)
OrthologWBGene00095337Pristionchus pacificusFrom_analysis (2)
WBGene00190247Caenorhabditis brenneriFrom_analysis (2)
WBGene00147451Caenorhabditis brenneriFrom_analysis (2)
WBGene00127853Caenorhabditis japonicaFrom_analysis (2)
WBGene00075128Caenorhabditis remaneiFrom_analysis (2)
WBGene00066344Caenorhabditis remaneiFrom_analysis (2)
WBGene00099607Pristionchus pacificusFrom_analysis (2)
WBGene00092843Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00028498Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00226351Brugia malayiFrom_analysisWormBase-Compara
WBGene00229376Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10832Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14155Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g13480Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10980Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g7676Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26678Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10128Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1065Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g18537Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3381Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17604Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00256.g7977Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g14106Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15603Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00015.g974Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04897Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014197Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10797Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g12463Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g12464Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g12465Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g22027Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40232910Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g14611Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00244083Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00244084Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00278883Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00268087Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000003023Saccharomyces cerevisiaeFrom_analysis (6)
FB:FBgn0043043Drosophila melanogasterFrom_analysis (9)
FB:FBgn0038130Drosophila melanogasterFrom_analysis (9)
FB:FBgn0039754Drosophila melanogasterFrom_analysis (4)
FB:FBgn0039755Drosophila melanogasterFrom_analysis (4)
FB:FBgn0039756Drosophila melanogasterFrom_analysis (4)
FB:FBgn0029172Drosophila melanogasterFrom_analysis (8)
FB:FBgn0086687Drosophila melanogasterFrom_analysis (9)
ZFIN:ZDB-GENE-031106-3Danio rerioFrom_analysis (9)
ZFIN:ZDB-GENE-050522-12Danio rerioFrom_analysis (9)
HGNC:10571Homo sapiensFrom_analysis (9)
HGNC:21088Homo sapiensFrom_analysis (9)
MGI:98239Mus musculusFrom_analysis (9)
MGI:98240Mus musculusFrom_analysis (9)
MGI:1353437Mus musculusFrom_analysis (9)
MGI:2670997Mus musculusFrom_analysis (9)
RGD:621177Rattus norvegicusFrom_analysis (9)
RGD:621176Rattus norvegicusFrom_analysis (9)
RGD:1563648Rattus norvegicusFrom_analysis (9)
RGD:1595370Rattus norvegicusFrom_analysis (9)
ParalogWBGene00001397Caenorhabditis elegansFrom_analysis (4)
WBGene00001398Caenorhabditis elegansFrom_analysis (3)
Structured_descriptionConcise_descriptionfat-7 encodes an essential delta-9 fatty acid desaturase that is required for the synthesis of monounsaturated fatty acids; fat-7 can substitute for the functions of the other two fatty acid desaturases, fat-5 and fat-6; RNA interference has shown that fat-7 is required for viability and normal growth.Paper_evidenceWBPaper00004149
WBPaper00004424
WBPaper00005754
WBPaper00006113
WBPaper00013538
WBPaper00013550
Curator_confirmedWBPerson324
WBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables stearoyl-CoA 9-desaturase activity. Involved in fatty acid biosynthetic process and post-embryonic development. Acts upstream of or within intracellular oxygen homeostasis and response to hypoxia. Predicted to be located in endoplasmic reticulum membrane. Expressed in intestinal cell. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 79. Is an ortholog of human SCD (stearoyl-CoA desaturase) and SCD5 (stearoyl-CoA desaturase 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0112160Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:21088)
Molecular_infoCorresponding_CDSF10D2.9
Corresponding_transcriptF10D2.9.1
Other_sequence (60)
Associated_featureWBsf019173
WBsf019174
WBsf019175
WBsf978978
WBsf233910
WBsf233911
Experimental_infoRNAi_result (54)
Expr_patternChronogram631
Expr4292
Expr4571
Expr5716
Expr13449
Expr16083
Expr1021466
Expr1148206
Expr2011440
Expr2029678
Drives_constructWBCnstr00004076
WBCnstr00009389
WBCnstr00011890
WBCnstr00016671
WBCnstr00020551
WBCnstr00036971
WBCnstr00042754
Construct_productWBCnstr00011890
WBCnstr00016671
WBCnstr00020551
WBCnstr00036971
WBCnstr00038737
Microarray_results (18)
Expression_cluster (383)
Interaction (289)
WBProcessWBbiopr:00000121
Map_infoMapVPosition0.613044Error0.000716
PositivePositive_cloneF10D2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4303
4307
Pseudo_map_position
Reference (130)
PictureWBPicture0000013088
WBPicture0000013096
WBPicture0000013098
Remarksequence connection from [Watts J]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene