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WormBase Tree Display for Gene: WBGene00000832

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Name Class

WBGene00000832SMapS_parentSequenceY23H5A
IdentityVersion1
NameCGC_namectn-1Person_evidenceWBPerson481
Sequence_nameY23H5A.5
Molecular_name (12)
Other_name (2)
Public_namectn-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classctn
Allele (245)
StrainWBStrain00037343
RNASeq_FPKM (74)
GO_annotation00021143
00021144
00021145
00021146
00021147
00021148
00107861
00107862
00107863
00107864
OrthologWBGene00056408Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00035352Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00162524Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00138092Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00193145Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00099262Pristionchus pacificusFrom_analysisOMA
WBGene00234970Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12340Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4380Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g17672Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g2892Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1778Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g8358Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17342Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g5316Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g23509Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_04881.g19185Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-ctn-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold627.g6829Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00691.g14446Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_13901Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_002092Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06725Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g20529Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10139020Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g363Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237903Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00305988Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263507Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292020Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0029105Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-060503-507Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:2512Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1859649Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1311434Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00000942Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00001978Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
Structured_descriptionConcise_descriptionctn-1 encodes a protein that belongs to the alpha-catulin family of catenin-like proteins; CTN-1 physically interacts in vivo with DYB-1/dystrobrevin; a ctn-1::GFP fusion is expressed in body wall, vulval, and anal muscles; in body wall muscles, CTN-1::GFP localizes to the plasma membranes near dense bodies.Paper_evidenceWBPaper00011358
WBPaper00041089
Curator_confirmedWBPerson1843
WBPerson324
Date_last_updated02 Aug 2012 00:00:00
Automated_descriptionPredicted to enable actin filament binding activity and cadherin binding activity. Involved in regulation of locomotion. Located in plasma membrane and striated muscle dense body. Expressed in body wall musculature; non-striated muscle; and somatic nervous system. Used to study Duchenne muscular dystrophy. Is an ortholog of human CTNNAL1 (catenin alpha like 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_info (2)
Models_disease_assertedWBDOannot00000293
Molecular_infoCorresponding_CDSY23H5A.5a
Y23H5A.5c
Y23H5A.5d
Corresponding_CDS_historyY23H5A.5a:wp274
Y23H5A.5b:wp274
Y23H5A.5c:wp228
Y23H5A.5d:wp210
Y23H5A.5d:wp228
Corresponding_transcriptY23H5A.5e
Y23H5A.5a.1
Y23H5A.5c.1
Y23H5A.5d.1
Y23H5A.5d.2
Y23H5A.5d.3
Other_sequence (47)
Associated_featureWBsf982915
WBsf982916
WBsf1009363
WBsf217315
WBsf217316
Experimental_infoRNAi_resultWBRNAi00002350Inferred_automaticallyRNAi_primary
WBRNAi00055702Inferred_automaticallyRNAi_primary
WBRNAi00055701Inferred_automaticallyRNAi_primary
WBRNAi00116607Inferred_automaticallyRNAi_primary
WBRNAi00004565Inferred_automaticallyRNAi_primary
WBRNAi00022472Inferred_automaticallyRNAi_primary
WBRNAi00036720Inferred_automaticallyRNAi_primary
Expr_pattern (11)
Drives_constructWBCnstr00008299
WBCnstr00008300
WBCnstr00013721
WBCnstr00013723
WBCnstr00018330
WBCnstr00037258
Construct_productWBCnstr00008299
WBCnstr00008300
WBCnstr00008301
WBCnstr00008302
WBCnstr00013723
WBCnstr00013724
WBCnstr00018330
WBCnstr00020433
WBCnstr00037258
Microarray_results (51)
Expression_cluster (177)
Interaction (29)
Map_infoMapIPosition-8.18787Error0.026165
PositivePositive_cloneY23H5AInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00011358
WBPaper00036762
WBPaper00037625
WBPaper00038491
WBPaper00039233
WBPaper00041089
WBPaper00043421
WBPaper00046703
WBPaper00055090
WBPaper00065040
RemarkSequence connection from [Broadbent ID], 02/06/12 krb.
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene