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WormBase Tree Display for Gene: WBGene00018285

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Name Class

WBGene00018285SMapS_parentSequenceF41E6
IdentityVersion3
NameCGC_namesmk-1Paper_evidenceWBPaper00027157
Sequence_nameF41E6.4
Molecular_nameF41E6.4a
F41E6.4a.1
CE41239
F41E6.4b
CE41240
F41E6.4b.1
F41E6.4b.2
F41E6.4c
Other_namerad-2Paper_evidenceWBPaper00031061
CELE_F41E6.4Accession_evidenceNDBBX284605
Public_namesmk-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:00WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
203 Apr 2006 17:19:49WBPerson2970Name_changeCGC_namesmk-1
322 Oct 2007 11:48:38WBPerson2970EventAcquires_mergeWBGene00004289
Name_changeOther_namerad-2
Acquires_mergeWBGene00004289
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsmk
Reference_alleleWBVar00089072
Allele (93)
StrainWBStrain00002686
WBStrain00034248
RNASeq_FPKM (74)
GO_annotation (12)
OrthologWBGene00062053Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00024707Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00156217Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00132704Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00191156Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00116514Pristionchus pacificusFrom_analysisInparanoid_8
CBOVI.g75Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g13146Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20864Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1990Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g19937Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g16429Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7257Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g12821Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g12617Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g12618Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g22729Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g25188Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g6674Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g2804Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00027.g1651Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-smk-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold541.g3389Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00857.g16161Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00857.g16162Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21769Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00378Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09501Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g12663Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50116900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15031Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00082505Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00243528Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00280588Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00265283Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288975Trichuris murisFrom_analysisWormBase-Compara
SGD:S000005145Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0024555Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-8142Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-030131-3958Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:20219Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:29267Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:33146Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1915984Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2144474Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:3588287Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:3588286Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1309059Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1309450Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptionsmk-1 encodes a novel, evolutionarily conserved protein that is orthologous to the mammalian and Dictyostelium discoideum SMEK (suppressor of MEK null) proteins; smk-1 activity is essential for several aspects of DAF-16-mediated longevity namely, the defense response to pathogenic bacteria and increased resistance to oxidative and UV-induced damage; in regulating DAF-16 activity, SMK-1 appears to act by affecting the transcription of DAF-16 target genes, such as sod-3, ctl-1, and lys-8; SMK-1 is present in the nucleus of intestinal cells, many head and tail neurons, and some hypodermal cells throughout development.Paper_evidenceWBPaper00027157
Curator_confirmedWBPerson1843
Date_last_updated12 Sep 2006 00:00:00
Automated_descriptionPredicted to enable protein phosphatase activator activity. Involved in several processes, including defense response to bacterium; negative regulation of mitotic DNA damage checkpoint; and response to radiation. Located in nucleus. Expressed in hypodermis; intestine; and tail. Is an ortholog of human PPP4R3A (protein phosphatase 4 regulatory subunit 3A) and PPP4R3B (protein phosphatase 4 regulatory subunit 3B).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF41E6.4a
F41E6.4b
Corresponding_CDS_historyF41E6.4a:wp137
F41E6.4a:wp177
F41E6.4b:wp177
F41E6.4c:wp254
Corresponding_transcriptF41E6.4c
F41E6.4a.1
F41E6.4b.1
F41E6.4b.2
Other_sequence (35)
Associated_feature (15)
Experimental_infoRNAi_result (50)
Expr_patternExpr3839
Expr3840
Expr6028
Expr1010585
Expr1037875
Expr1150858
Expr2015919
Expr2034152
Drives_constructWBCnstr00003227
WBCnstr00011690
WBCnstr00026637
Construct_productWBCnstr00011690
WBCnstr00026637
Microarray_results (40)
Expression_cluster (121)
Interaction (333)
WBProcessWBbiopr:00000001
WBbiopr:00000039
Map_infoMapVPosition1.48475Error0.002222
PositivePositive_cloneF41E6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point362
363
5716
Pseudo_map_position
ReferenceWBPaper00000565
WBPaper00000663
WBPaper00000726
WBPaper00000733
WBPaper00000994
WBPaper00001068
WBPaper00001154
WBPaper00001173
WBPaper00001335
WBPaper00001426
WBPaper00001460
WBPaper00001495
WBPaper00001699
WBPaper00001776
WBPaper00003293
WBPaper00003311
WBPaper00003543
WBPaper00014016
WBPaper00015284
WBPaper00015598
WBPaper00020894
WBPaper00023982
WBPaper00027157
WBPaper00027176
WBPaper00027223
WBPaper00029337
WBPaper00031061
WBPaper00032438
WBPaper00032582
WBPaper00033203
WBPaper00035968
WBPaper00036414
WBPaper00036472
WBPaper00036730
WBPaper00038491
WBPaper00042375
WBPaper00044949
WBPaper00046901
WBPaper00048917
WBPaper00050039
WBPaper00052785
WBPaper00054944
WBPaper00054985
WBPaper00055090
WBPaper00057407
WBPaper00059065
WBPaper00059408
WBPaper00060774
Remark
MethodGene