WormBase Tree Display for Gene: WBGene00019767
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WBGene00019767 | SMap | S_parent | Sequence | M04F3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | rpa-2 | |||||||
Sequence_name | M04F3.1 | ||||||||
Molecular_name | M04F3.1 | ||||||||
M04F3.1.1 | |||||||||
CE12414 | |||||||||
Other_name | CeRPA | Paper_evidence | WBPaper00025014 | ||||||
WBPaper00031956 | |||||||||
CeRPA32 | Paper_evidence | WBPaper00040684 | |||||||
CELE_M04F3.1 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | rpa-2 | ||||||||
DB_info | Database | AceView | gene | 1F339 | |||||
WormQTL | gene | WBGene00019767 | |||||||
WormFlux | gene | WBGene00019767 | |||||||
NDB | locus_tag | CELE_M04F3.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00019767|UniProtKB=Q95Y97 | |||||||
family | PTHR13989 | ||||||||
NCBI | gene | 172092 | |||||||
RefSeq | protein | NM_059045.8 | |||||||
TREEFAM | TREEFAM_ID | TF352968 | |||||||
TrEMBL | UniProtAcc | Q95Y97 | |||||||
UniProt_GCRP | UniProtAcc | Q95Y97 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 07 Feb 2007 08:58:58 | WBPerson2970 | Name_change | CGC_name | rpa-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rpa | ||||||||
Allele (14) | |||||||||
Strain | WBStrain00035259 | ||||||||
WBStrain00036377 | |||||||||
WBStrain00034799 | |||||||||
WBStrain00051041 | |||||||||
WBStrain00051036 | |||||||||
WBStrain00051034 | |||||||||
WBStrain00051035 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (23) | |||||||||
Ortholog | WBGene00071113 | Caenorhabditis remanei | From_analysis | OMA | |||||
TreeFam | |||||||||
WormBase-Compara | |||||||||
WBGene00026713 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
OrthoMCL | |||||||||
OMA | |||||||||
WormBase-Compara | |||||||||
WBGene00137726 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
WBGene00153381 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
WBGene00160890 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
WBGene00033667 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
WBGene00138646 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
WBGene00056198 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
CSP26.g21301 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP40.g4924 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-rpa-2 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00303.g9037 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
GCK72_002969 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_10292000 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrI_pilon.g775 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
SGD:S000005256 | Saccharomyces cerevisiae | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
OrthoFinder | |||||||||
Panther | |||||||||
FB:FBgn0032906 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
OrthoFinder | |||||||||
Panther | |||||||||
ZFIN:ZDB-GENE-010131-3 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
HGNC:10290 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
HGNC:30305 | Homo sapiens | From_analysis | Hieranoid | ||||||
Inparanoid | |||||||||
OrthoFinder | |||||||||
Panther | |||||||||
MGI:1339939 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
RGD:619714 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
Paralog | WBGene00019079 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
Structured_description | Concise_description | rpa-2 encodes the C. elegans homolog of the medium subunit of replication protein A (RPA); by homology RPA-2 is predicted to function in several DNA metabolic processes, including recombination, repair, and replication, as well as cell cycle and DNA damage checkpoints; RPA-2 physically interacts with RPA-1, the RPA large subunit, in vivo. | Paper_evidence | WBPaper00025138 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 05 Aug 2012 00:00:00 | ||||||||
Automated_description | Enables enzyme binding activity. Predicted to be involved in DNA replication; double-strand break repair via homologous recombination; and nucleotide-excision repair. Predicted to be located in chromosome, telomeric region and site of double-strand break. Predicted to be part of DNA replication factor A complex. Expressed in pharyngeal neurons and seam cell. Is an ortholog of human RPA2 (replication protein A2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | M04F3.1 | |||||||
Corresponding_transcript | M04F3.1.1 | ||||||||
Other_sequence | CGC00518_1 | ||||||||
CRC01239_1 | |||||||||
CR09300 | |||||||||
CR09179 | |||||||||
CBC03124_1 | |||||||||
CJC02916_1 | |||||||||
CR02657 | |||||||||
Associated_feature | WBsf643240 | ||||||||
WBsf643241 | |||||||||
WBsf654782 | |||||||||
WBsf656251 | |||||||||
WBsf981006 | |||||||||
WBsf983484 | |||||||||
WBsf983485 | |||||||||
WBsf217575 | |||||||||
Experimental_info | RNAi_result | WBRNAi00097266 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00084318 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00111831 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097221 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097176 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086437 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086439 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077854 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025991 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00097311 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00050911 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007805 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00064080 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00108105 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00034428 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00084315 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00004035 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025990 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram2029 | ||||||||
Expr7623 | |||||||||
Expr1026249 | |||||||||
Expr1038551 | |||||||||
Expr1154609 | |||||||||
Expr1200320 | |||||||||
Expr2015415 | |||||||||
Expr2033650 | |||||||||
Drives_construct | WBCnstr00001067 | ||||||||
WBCnstr00012768 | |||||||||
WBCnstr00025609 | |||||||||
Construct_product | WBCnstr00025609 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (154) | |||||||||
Interaction (266) | |||||||||
Map_info | Map | I | Position | -0.738345 | Error | 0.002057 | |||
Positive | Positive_clone | M04F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (14) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |