WormBase Tree Display for Gene: WBGene00019163
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WBGene00019163 | SMap | S_parent | Sequence | H06H21 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | ubxn-6 | Person_evidence | WBPerson2838 | |||||
WBPerson4369 | |||||||||
Sequence_name | H06H21.6 | ||||||||
Molecular_name | H06H21.6 | ||||||||
H06H21.6.1 | |||||||||
CE33662 | |||||||||
Other_name | CELE_H06H21.6 | Accession_evidence | NDB | BX284604 | |||||
Public_name | ubxn-6 | ||||||||
DB_info | Database | AceView | gene | 4F572 | |||||
WormQTL | gene | WBGene00019163 | |||||||
WormFlux | gene | WBGene00019163 | |||||||
NDB | locus_tag | CELE_H06H21.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00019163|UniProtKB=Q8WTJ4 | |||||||
family | PTHR23153 | ||||||||
NCBI | gene | 177253 | |||||||
RefSeq | protein | NM_068247.8 | |||||||
SwissProt | UniProtAcc | Q8WTJ4 | |||||||
TREEFAM | TREEFAM_ID | TF314617 | |||||||
UniProt_GCRP | UniProtAcc | Q8WTJ4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 05 Jan 2006 11:22:20 | WBPerson2970 | Name_change | CGC_name | ubxn-6 | ||||
3 | 06 Mar 2018 14:47:25 | WBPerson4025 | Event | Split_into | WBGene00302995 | ||||
Split_into | WBGene00302995 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ubxn | ||||||||
Allele (36) | |||||||||
Strain | WBStrain00003521 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (3) | |||||||||
Contained_in_operon | CEOP4152 | ||||||||
CEOP5608 | |||||||||
Ortholog (36) | |||||||||
Paralog | WBGene00007100 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
Structured_description | Concise_description | ubxn-6 encodes one of six C. elegans UBX (ubiquitin regulatory X) domain-containing proteins. | Paper_evidence | WBPaper00029386 | |||||
WBPaper00037734 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 05 Apr 2011 00:00:00 | ||||||||
Automated_description | Predicted to be located in cytoplasm. Expressed in pharynx. Is an ortholog of human UBXN6 (UBX domain protein 6). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | H06H21.6 | |||||||
Corresponding_CDS_history | H06H21.6:wp97 | ||||||||
H06H21.6a:wp264 | |||||||||
H06H21.6b:wp264 | |||||||||
Corresponding_transcript | H06H21.6.1 | ||||||||
Associated_feature | WBsf230024 | ||||||||
Experimental_info | RNAi_result | WBRNAi00049314 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00062292 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00016208 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049313 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00033670 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078147 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr4671 | ||||||||
Expr4677 | |||||||||
Expr6273 | |||||||||
Expr1025316 | |||||||||
Expr1038275 | |||||||||
Expr1153059 | |||||||||
Expr2017734 | |||||||||
Expr2035873 | |||||||||
Drives_construct | WBCnstr00003979 | ||||||||
WBCnstr00012165 | |||||||||
WBCnstr00026018 | |||||||||
Construct_product | WBCnstr00012165 | ||||||||
WBCnstr00026018 | |||||||||
Antibody | WBAntibody00002858 | ||||||||
Microarray_results | SMD_H06H21.6 | ||||||||
SMD_H06H21.7 | |||||||||
173548_s_at | |||||||||
A_12_P100330 | |||||||||
A_12_P171947 | |||||||||
A_12_P171948 | |||||||||
A_12_P171949 | |||||||||
Aff_H06H21.6 | |||||||||
Aff_H06H21.7 | |||||||||
GPL13394_WBGene00019163 | |||||||||
GPL13914_H06H21.6 | |||||||||
GPL14144_H06H21.6_30-89_0.829_44_C | |||||||||
GPL14144_H06H21.6_664-723_0.914_10_A | |||||||||
GPL14144_H06H21.6_882-941_0.839_39_B | |||||||||
GPL19516_CGZ0025931 | |||||||||
GPL19516_CGZ0025932 | |||||||||
GPL19516_CGZ0025933 | |||||||||
GPL19516_CGZ0025934 | |||||||||
GPL21109_H06H21.6.1 | |||||||||
GPL3518_CE17964 | |||||||||
GPL8304_CE_WBGene00019163_A | |||||||||
GPL8304_CE_WBGene00019163_C | |||||||||
GPL8673_H06H21_6P00071 | |||||||||
GPL8673_H06H21_6P00332 | |||||||||
GPL8673_H06H21_6P01138 | |||||||||
GPL9450_H06H21.6 | |||||||||
GPL9450_H06H21.7a | |||||||||
GPL9450_H06H21.7b | |||||||||
cea2.c.29348 | |||||||||
cea2.c.29361 | |||||||||
cea2.d.30854 | |||||||||
Expression_cluster (96) | |||||||||
Interaction (76) | |||||||||
Map_info | Map | IV | Position | 1.28692 | Error | 0.004576 | |||
Positive | Positive_clone | H06H21 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00029386 | ||||||||
WBPaper00037734 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00055951 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |