WormBase Tree Display for Gene: WBGene00007696
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WBGene00007696 | SMap | S_parent | Sequence | C24F3 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | tram-1 | Person_evidence | WBPerson295 | |||
WBPerson6230 | |||||||
Sequence_name | C24F3.1 | ||||||
Molecular_name | C24F3.1a | ||||||
C24F3.1a.1 | |||||||
CE18517 | |||||||
C24F3.1b | |||||||
CE18518 | |||||||
C24F3.1b.1 | |||||||
Other_name | CELE_C24F3.1 | Accession_evidence | NDB | BX284604 | |||
Public_name | tram-1 | ||||||
DB_info | Database | AceView | gene | 4K984 | |||
WormQTL | gene | WBGene00007696 | |||||
WormFlux | gene | WBGene00007696 | |||||
NDB | locus_tag | CELE_C24F3.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00007696|UniProtKB=Q9XXK7 | |||||
family | PTHR12371 | ||||||
NCBI | gene | 177902 | |||||
RefSeq | protein | NM_069467.7 | |||||
NM_069468.4 | |||||||
TrEMBL | UniProtAcc | Q9XXK7 | |||||
Q9U3P5 | |||||||
UniProt_GCRP | UniProtAcc | Q9XXK7 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | tram | ||||||
Allele (12) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (13) | |||||||
Contained_in_operon | CEOP4364 | ||||||
Ortholog (49) | |||||||
Paralog | WBGene00002044 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00006505 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Structured_description | Concise_description | tram-1 encodes the C. elegans ortholog of translocating chain-associated membrane protein 1; by homology, TRAM-1 is predicted to function in translocation of protein across the endoplasmic reticulum membrane; TRAM-1 localizes to the rough endoplasmic reticulum (ER) as well as to post-ER compartments such as the ciliary base. | Paper_evidence | WBPaper00033144 | |||
WBPaper00041921 | |||||||
WBPaper00038248 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 02 May 2014 00:00:00 | ||||||
Automated_description | Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, translocation and protein insertion into ER membrane. Located in dendrite terminus; periciliary membrane compartment; and rough endoplasmic reticulum. Is an ortholog of human TRAM1 (translocation associated membrane protein 1); TRAM1L1 (translocation associated membrane protein 1 like 1); and TRAM2 (translocation associated membrane protein 2). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C24F3.1a | |||||
C24F3.1b | |||||||
Corresponding_transcript | C24F3.1a.1 | ||||||
C24F3.1b.1 | |||||||
Other_sequence (21) | |||||||
Associated_feature | WBsf668216 | ||||||
WBsf668217 | |||||||
WBsf230696 | |||||||
WBsf230697 | |||||||
WBsf230698 | |||||||
Experimental_info | RNAi_result | WBRNAi00041091 | Inferred_automatically | RNAi_primary | |||
WBRNAi00029146 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011110 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00023063 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr12495 | ||||||
Expr1029018 | |||||||
Expr1033327 | |||||||
Expr1145128 | |||||||
Expr2017480 | |||||||
Expr2035619 | |||||||
Drives_construct | WBCnstr00019719 | ||||||
Construct_product | WBCnstr00017648 | ||||||
WBCnstr00018388 | |||||||
WBCnstr00019195 | |||||||
WBCnstr00019719 | |||||||
WBCnstr00022761 | |||||||
Microarray_results | SMD_C24F3.1 | ||||||
173546_s_at | |||||||
182499_s_at | |||||||
A_12_P106734 | |||||||
Aff_C24F3.1A | |||||||
GPL13394_WBGene00007696 | |||||||
GPL13914_C24F3.1 | |||||||
GPL14144_C24F3.1b_534-593_0.911_15_C | |||||||
GPL14144_C24F3.1b_878-937_0.935_2_B | |||||||
GPL14144_C24F3.1b_978-1037_0.952_1_A | |||||||
GPL19516_CGZ0005728 | |||||||
GPL19516_CGZ0005729 | |||||||
GPL21109_C24F3.1a | |||||||
GPL3518_CE18517 | |||||||
GPL8304_CE_WBGene00007696_A | |||||||
GPL8304_CE_WBGene00007696_C | |||||||
GPL8673_C24F3_1aP00157 | |||||||
GPL8673_C24F3_1aP00475 | |||||||
GPL8673_C24F3_1aP00815 | |||||||
GPL8673_C24F3_1bP00158 | |||||||
GPL8673_C24F3_1bP00482 | |||||||
GPL8673_C24F3_1bP00820 | |||||||
GPL9450_C24F3.1a | |||||||
GPL9450_C24F3.1b | |||||||
cea2.d.13994 | |||||||
cea2.p.86601 | |||||||
Expression_cluster (150) | |||||||
Interaction (36) | |||||||
Map_info | Map | IV | Position | 4.56137 | |||
Positive | Positive_clone | C24F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (14) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |