WormBase Tree Display for Gene: WBGene00000960
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WBGene00000960 | SMap | S_parent | Sequence | F54G8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | dgk-3 | Person_evidence | WBPerson453 | |||||
Sequence_name | F54G8.2 | ||||||||
Molecular_name | F54G8.2 | ||||||||
F54G8.2.1 | |||||||||
CE46230 | |||||||||
Other_name | CELE_F54G8.2 | Accession_evidence | NDB | BX284603 | |||||
Public_name | dgk-3 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | dgk | ||||||||
Allele (60) | |||||||||
Strain | WBStrain00035591 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (19) | |||||||||
Ortholog (45) | |||||||||
Paralog | WBGene00000958 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00000959 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00006483 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00019428 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | dgk-3 encodes a diacylglycerol kinase that is the C. elegans ortholog of mammalian DGK-beta; dgk-3 activity is required for regulation of long-term thermotactic behavioral plasticity and for regulation of olfactory adaptation; large-scale expression studies have reported dgk-3 expression in head neurons, the intestine, and the pharyngeal lumen, while expression profiling indicates that dgk-3 is expressed in the AFD thermosensory neurons as well as a small number of additional sensory neurons. | Paper_evidence | WBPaper00002318 | |||||
WBPaper00006525 | |||||||||
WBPaper00024671 | |||||||||
WBPaper00027044 | |||||||||
WBPaper00028767 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 12 Feb 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable ATP-dependent diacylglycerol kinase activity. Involved in olfactory behavior; regulation of long-term neuronal synaptic plasticity; and thermotaxis. Predicted to be located in plasma membrane. Expressed in amphid neurons; head; and pharyngeal lumen. Is an ortholog of human DGKA (diacylglycerol kinase alpha); DGKB (diacylglycerol kinase beta); and DGKG (diacylglycerol kinase gamma). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F54G8.2 | |||||||
Corresponding_CDS_history | F54G8.2:wp98 | ||||||||
F54G8.2:wp227 | |||||||||
Corresponding_transcript | F54G8.2.1 | ||||||||
Other_sequence (14) | |||||||||
Associated_feature | WBsf645468 | ||||||||
WBsf993593 | |||||||||
WBsf993594 | |||||||||
WBsf993595 | |||||||||
WBsf1015556 | |||||||||
Experimental_info | RNAi_result | WBRNAi00048388 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006163 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015668 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032822 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram293 | ||||||||
Expr23 | |||||||||
Expr6186 | |||||||||
Expr11097 | |||||||||
Expr1022527 | |||||||||
Expr1152180 | |||||||||
Expr2010865 | |||||||||
Expr2029103 | |||||||||
Drives_construct (3) | |||||||||
Construct_product | WBCnstr00018166 | ||||||||
WBCnstr00037178 | |||||||||
Microarray_results | SMD_F54G8.2 | ||||||||
190810_at | |||||||||
A_12_P103814 | |||||||||
Aff_F54G8.2 | |||||||||
GPL13394_WBGene00000960 | |||||||||
GPL13914_F54G8.2 | |||||||||
GPL14144_F54G8.2_1220-1279_0.839_68_A | |||||||||
GPL14144_F54G8.2_1857-1916_0.921_14_B | |||||||||
GPL14144_F54G8.2_1999-2058_0.908_24_C | |||||||||
GPL19516_CGZ0011496 | |||||||||
GPL19516_CGZ0023932 | |||||||||
GPL21109_Cat_F54G8.2 | |||||||||
GPL21109_F54G8.2 | |||||||||
GPL3518_CE00204 | |||||||||
GPL8304_CE_WBGene00000960_A | |||||||||
GPL8304_CE_WBGene00000960_B | |||||||||
GPL8673_F54G8_2P01118 | |||||||||
GPL8673_F54G8_2P01350 | |||||||||
GPL8673_F54G8_2P02232 | |||||||||
GPL9450_F54G8.2 | |||||||||
cea2.3.16303 | |||||||||
cea2.p.65922 | |||||||||
Expression_cluster (91) | |||||||||
Interaction | WBInteraction000009141 | ||||||||
WBInteraction000049966 | |||||||||
WBInteraction000122632 | |||||||||
WBInteraction000173106 | |||||||||
WBInteraction000382709 | |||||||||
WBInteraction000411402 | |||||||||
WBInteraction000419419 | |||||||||
WBInteraction000439799 | |||||||||
WBInteraction000456311 | |||||||||
Map_info | Map | III | Position | 0.250771 | Error | 0.010231 | |||
Positive | Positive_clone | F54G8 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point (2) | ||||||||
Pseudo_map_position | |||||||||
Reference (16) | |||||||||
Remark | Sequence connection from [Nurrish SJ], [krb 020711] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |