WormBase Tree Display for Gene: WBGene00000024
expand all nodes | collapse all nodes | view schema
WBGene00000024 | SMap | S_parent | Sequence | AC3 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | abu | ||||||
Allele (12) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00057944 | ||||||
00057945 | |||||||
00057946 | |||||||
00057947 | |||||||
Ortholog (26) | |||||||
Paralog (30) | |||||||
Structured_description | Concise_description | abu-1 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and multiple cysteine-rich repeats (DUF139); abu-1 expression is induced by blockage of the endoplasmic reticulum unfolded protein response, and ABU-1 may help protect the organism from damage by improperly folded nascent protein; when expressed in COS1 cells, ABU-1 localizes to the endoplasmic reticulum membrane. | Paper_evidence | WBPaper00005432 | |||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 25 Oct 2013 00:00:00 | ||||||
Automated_description | Involved in endoplasmic reticulum unfolded protein response. Located in endoplasmic reticulum membrane. Expressed in pharynx. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | AC3.3 | |||||
Corresponding_transcript | AC3.3.1 | ||||||
Other_sequence | EY468455.1 | ||||||
ACC21420_1 | |||||||
CJC05164_1 | |||||||
Associated_feature | WBsf652988 | ||||||
WBsf1001106 | |||||||
WBsf1020303 | |||||||
WBsf234385 | |||||||
Experimental_info | RNAi_result (27) | ||||||
Expr_pattern | Expr2205 | ||||||
Expr2206 | |||||||
Expr2207 | |||||||
Expr1015645 | |||||||
Expr1142803 | |||||||
Expr2009109 | |||||||
Expr2027345 | |||||||
Drives_construct | WBCnstr00005153 | ||||||
WBCnstr00005158 | |||||||
WBCnstr00037789 | |||||||
Construct_product | WBCnstr00037789 | ||||||
Microarray_results | SMD_AC3.3 | ||||||
177193_s_at | |||||||
A_12_P115498 | |||||||
A_12_P144890 | |||||||
Aff_AC3.3 | |||||||
GPL13394_WBGene00004098 | |||||||
GPL13914_AC3.4 | |||||||
GPL14144_AC3.3_572-631_0.831_129_A | |||||||
GPL19516_CGZ0000025 | |||||||
GPL19516_CGZ0000026 | |||||||
GPL21109_AC3.3 | |||||||
GPL21109_AC3.4 | |||||||
GPL3518_CE05133 | |||||||
GPL8304_CE_WBGene00000024_A | |||||||
GPL8304_CE_WBGene00000024_C | |||||||
GPL8304_CE_WBGene00004098_A | |||||||
GPL8673_AC3_3P00007 | |||||||
GPL8673_AC3_3P00012 | |||||||
GPL8673_AC3_3P00018 | |||||||
GPL9450_AC3.3 | |||||||
cea2.d.08299 | |||||||
cea2.d.08308 | |||||||
Expression_cluster (194) | |||||||
Interaction (79) | |||||||
WBProcess | WBbiopr:00000008 | ||||||
WBbiopr:00000046 | |||||||
WBbiopr:00000079 | |||||||
Map_info | Map | V | Position | 2.5233 | Error | 0.001312 | |
Positive | Positive_clone | AC3 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (9) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |