WormBase Tree Display for Gene: WBGene00012583
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| WBGene00012583 | SMap | S_parent | Sequence | Y38E10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-4 | Person_evidence | WBPerson655 | |||||
| Sequence_name | Y38E10A.5 | ||||||||
| Molecular_name | Y38E10A.5 | ||||||||
| Y38E10A.5.1 | |||||||||
| CE28701 | |||||||||
| Other_name | CELE_Y38E10A.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | clec-4 | ||||||||
| DB_info | Database | AceView | gene | 2M868 | |||||
| WormQTL | gene | WBGene00012583 | |||||||
| WormFlux | gene | WBGene00012583 | |||||||
| NDB | locus_tag | CELE_Y38E10A.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012583|UniProtKB=Q9NAK5 | |||||||
| family | PTHR22991 | ||||||||
| NCBI | gene | 189654 | |||||||
| RefSeq | protein | NM_064287.4 | |||||||
| TREEFAM | TREEFAM_ID | TF351663 | |||||||
| TrEMBL | UniProtAcc | Q9NAK5 | |||||||
| UniProt_GCRP | UniProtAcc | Q9NAK5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Apr 2005 13:53:45 | WBPerson2970 | Name_change | CGC_name | clec-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (68) | |||||||||
| Possibly_affected_by | WBVar02154113 | ||||||||
| Strain | WBStrain00032353 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00096145 | ||||||||
| Ortholog (13) | |||||||||
| Paralog (52) | |||||||||
| Structured_description | Concise_description | clec-4 encodes a C-type lectin; clec-4 expression is upregulated in response to stressors, including pathogens and ionizing radiation. | Paper_evidence | WBPaper00041533 | |||||
| WBPaper00028789 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 01 May 2013 00:00:00 | ||||||||
| Automated_description | Acts upstream of or within with a positive effect on feeding behavior. Expressed in amphid neurons; int1DL; int1DR; int1VL; and int1VR. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info (4) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020276 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091321 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056026 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr15811 | ||||||||
| Expr1020709 | |||||||||
| Expr1035569 | |||||||||
| Expr1159549 | |||||||||
| Expr2010182 | |||||||||
| Expr2028424 | |||||||||
| Drives_construct | WBCnstr00042531 | ||||||||
| Microarray_results | SMD_Y38E10A.E | ||||||||
| 185425_at | |||||||||
| A_12_P106209 | |||||||||
| GPL13394_WBGene00012583 | |||||||||
| GPL13914_Y38E10A.5 | |||||||||
| GPL14144_Y38E10A.5_1227-1286_0.964_1_A | |||||||||
| GPL19516_CGZ0044591 | |||||||||
| GPL21109_Y38E10A.5 | |||||||||
| GPL3518_CE28701 | |||||||||
| GPL8304_CE_WBGene00012583_A | |||||||||
| GPL8673_Y38E10A_5P00645 | |||||||||
| GPL8673_Y38E10A_5P00943 | |||||||||
| GPL8673_Y38E10A_5P01107 | |||||||||
| GPL9450_Y38E10A.5 | |||||||||
| cea2.i.16723 | |||||||||
| Expression_cluster (357) | |||||||||
| Interaction | WBInteraction000537372 | ||||||||
| WBInteraction000537373 | |||||||||
| WBInteraction000537392 | |||||||||
| WBInteraction000537393 | |||||||||
| WBInteraction000537406 | |||||||||
| WBProcess | WBbiopr:00000039 | ||||||||
| WBbiopr:00000092 | |||||||||
| Map_info | Map | II | Position | 10.4075 | Error | 0.015845 | |||
| Positive | Positive_clone | Y38E10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031686 | ||||||||
| WBPaper00035429 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041533 | |||||||||
| WBPaper00047766 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057576 | |||||||||
| WBPaper00061178 | |||||||||
| WBPaper00061236 | |||||||||
| WBPaper00062456 | |||||||||
| WBPaper00064375 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
