WormBase Tree Display for Gene: WBGene00006928

WBGene00006928 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 1
    Name: CGC_name: vit-4 Person_evidence: WBPerson71
      Sequence_name: F59D8.2
      Molecular_name: F59D8.2
        F59D8.2.1
        CE26817
      Other_name: F59D8.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        F59D8.b Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_F59D8.2 Accession_evidence: NDB BX284606
      Public_name: vit-4
    DB_info: Database: AceView gene XE176
        WormQTL gene WBGene00006928
        WormFlux gene WBGene00006928
        NDB locus_tag CELE_F59D8.2
        Panther gene CAEEL|WormBase=WBGene00006928|UniProtKB=P18947
          family PTHR23345
        NCBI gene 180646
        RefSeq protein NM_076211.8
        SwissProt UniProtAcc P18947
        TREEFAM TREEFAM_ID TF332911
        UniProt_GCRP UniProtAcc P18947
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:43 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vit
    Allele (36)
    Legacy_information: Structural gene for vitellogenin yp170A; adjacent to vit-3.
      [C.elegansII] NMK. Encodes vitellogenin yp170A (95% identical to VIT-5). Gene adjacent and nearly identical to vit-3. [Speith et al. 1985b; BL]
    Strain: WBStrain00032883
      WBStrain00047209
    RNASeq_FPKM (74)
    GO_annotation: 00039636
      00039637
      00039638
      00039639
      00115040
      00115041
    Ortholog (92)
    Paralog: WBGene00006925 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006926 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006927 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00006930 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006929 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F59D8.2
    Corresponding_transcript: F59D8.2.1
    Other_sequence: FK801480.1
      FF678385.1
      CJC18127_1
      CR05816
      FK808526.1
      FG976463.1
      ACC19366_1
      FF678915.1
      CBC10589_1
      FK803766.1
      FK804173.1
      FK800727.1
      EV851612.1
      FK803298.1
      FK808378.1
      CBC00693_1
      CGC01145_1
      CR10961
      FK810017.1
      DW718500.1
      CRC01029_2
      EX910196.1
      FF678863.1
      FK809424.1
      FK801537.1
      FK805780.1
      FK801544.1
      FK804368.1
      CRC03608_1
      EX915432.1
      FK805649.1
      FK805301.1
      CR00578
      NAC02653_1
      CSC01747_1
      FK804551.1
      DW677740.1
      FK804534.1
      CGC00754_1
      FK801271.1
      FK802718.1
      FK809199.1
      FK799978.1
      FK803686.1
      FK800158.1
      FK802448.1
      FK808153.1
      FG974206.1
      GE625284.1
      FK808608.1
      OOC00114_1
      FK804279.1
      FF678733.1
      FF678770.1
      Name_isotig00743
      CGC00264_1
      FK809403.1
      FG978936.1
      FK809257.1
      FD515055.1
      FF679006.1
      FF679250.1
      PPC00020_4
      FK801452.1
      FK804504.1
      FD515461.1
      FK800011.1
      FK801207.1
      FK808666.1
      CRC01657_1
      FF678952.1
      CRC01029_1
      EV851207.1
      FK807177.1
      FK804877.1
      CGC01229_1
      FK801041.1
      PPC00001_1
      FK804271.1
      FK801499.1
      FK803127.1
      FF679057.1
      FG972647.1
      FK805426.1
      CR02755
      FK799889.1
      CRC10884_1
      FK806276.1
      DVC01359_1
      FK802922.1
      HCC01077_1
      FK801137.1
      AE00146
      EX913094.1
      FK807268.1
      FK801044.1
      FK807791.1
      FK801870.1
      AE02198
      FK804025.1
      ES741291.1
      EX009619.1
      FK806661.1
      FK800157.1
      CRC07226_1
      CSC01954_1
      FK804220.1
      FK803477.1
      FK809926.1
      FK807966.1
      FK801021.1
      FK808552.1
      FK804573.1
      PP00544
      FG974796.1
      CGC00643_1
      HCC08442_1
      GE625205.1
      EY460067.1
      FK803511.1
      CJC04840_1
      FF679009.1
      CGC00633_1
      GE625754.1
      FK803439.1
    Associated_feature: WBsf1004666
      WBsf237187
  Experimental_info: RNAi_result (42)
    Expr_pattern: Expr16163
      Expr1152928
      Expr2036139
    Drives_construct: WBCnstr00034092
    Construct_product: WBCnstr00034092
    Microarray_results: SMD_F56B6.1
      SMD_F59D8.A
      SMD_F59D8.D
      171723_x_at
      172133_x_at
      172134_x_at
      172673_x_at
      172696_x_at
      194239_x_at
      A_12_P114934
      A_12_P132610
      GPL19516_CGZ0025596
      GPL21109_F59D8.2
      GPL3518_CE26817
      GPL8304_CE_WBGene00006928_A
      cea2.3.17694
      cea2.p.148120
    Expression_cluster (389)
    Interaction (61)
  Map_info: Map: X Position: -10.0749 Error: 0.015222
    Positive: Positive_clone: F59D8 Inferred_automatically: From sequence, transcript, pseudogene data
        YOLK3-8
    Pseudo_map_position
  Reference (26)
  Remark: F56B6.a changed to overlapping F59D8.2 by J.Spieth [sdm 0103]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene