WormBase Tree Display for Gene: WBGene00000832

WBGene00000832 SMap: S_parent: Sequence: Y23H5A
  Identity: Version: 1
    Name: CGC_name: ctn-1 Person_evidence: WBPerson481
      Sequence_name: Y23H5A.5
      Molecular_name (12)
      Other_name (2)
      Public_name: ctn-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ctn
    Allele (245)
    Strain: WBStrain00037343
    RNASeq_FPKM (74)
    GO_annotation: 00021143
      00021144
      00021145
      00021146
      00021147
      00021148
      00107861
      00107862
      00107863
      00107864
    Ortholog (35)
    Paralog: WBGene00000942 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00001978 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Concise_description: ctn-1 encodes a protein that belongs to the alpha-catulin family of catenin-like proteins; CTN-1 physically interacts in vivo with DYB-1/dystrobrevin; a ctn-1::GFP fusion is expressed in body wall, vulval, and anal muscles; in body wall muscles, CTN-1::GFP localizes to the plasma membranes near dense bodies. Paper_evidence: WBPaper00011358
            WBPaper00041089
          Curator_confirmed: WBPerson1843
            WBPerson324
          Date_last_updated: 02 Aug 2012 00:00:00
      Automated_description: Predicted to enable actin filament binding activity and cadherin binding activity. Involved in regulation of locomotion. Located in plasma membrane and striated muscle dense body. Expressed in body wall musculature; non-striated muscle; and somatic nervous system. Used to study Duchenne muscular dystrophy. Is an ortholog of human CTNNAL1 (catenin alpha like 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info (2)
  Models_disease_asserted: WBDOannot00000293
  Molecular_info: Corresponding_CDS: Y23H5A.5a
      Y23H5A.5c
      Y23H5A.5d
    Corresponding_CDS_history: Y23H5A.5a:wp274
      Y23H5A.5b:wp274
      Y23H5A.5c:wp228
      Y23H5A.5d:wp210
      Y23H5A.5d:wp228
    Corresponding_transcript: Y23H5A.5e
      Y23H5A.5a.1
      Y23H5A.5c.1
      Y23H5A.5d.1
      Y23H5A.5d.2
      Y23H5A.5d.3
    Other_sequence (47)
    Associated_feature: WBsf982915
      WBsf982916
      WBsf1009363
      WBsf217315
      WBsf217316
  Experimental_info: RNAi_result: WBRNAi00002350 Inferred_automatically: RNAi_primary
      WBRNAi00055702 Inferred_automatically: RNAi_primary
      WBRNAi00055701 Inferred_automatically: RNAi_primary
      WBRNAi00116607 Inferred_automatically: RNAi_primary
      WBRNAi00004565 Inferred_automatically: RNAi_primary
      WBRNAi00022472 Inferred_automatically: RNAi_primary
      WBRNAi00036720 Inferred_automatically: RNAi_primary
    Expr_pattern (11)
    Drives_construct: WBCnstr00008299
      WBCnstr00008300
      WBCnstr00013721
      WBCnstr00013723
      WBCnstr00018330
      WBCnstr00037258
    Construct_product: WBCnstr00008299
      WBCnstr00008300
      WBCnstr00008301
      WBCnstr00008302
      WBCnstr00013723
      WBCnstr00013724
      WBCnstr00018330
      WBCnstr00020433
      WBCnstr00037258
    Microarray_results (51)
    Expression_cluster (177)
    Interaction: WBInteraction000030203
      WBInteraction000030204
      WBInteraction000114345
      WBInteraction000122692
      WBInteraction000316698
      WBInteraction000366193
      WBInteraction000384097
      WBInteraction000399083
      WBInteraction000504535
      WBInteraction000509581
      WBInteraction000509582
      WBInteraction000509584
      WBInteraction000509586
      WBInteraction000522611
      WBInteraction000522612
      WBInteraction000522613
      WBInteraction000525260
      WBInteraction000541642
      WBInteraction000546008
      WBInteraction000547809
      WBInteraction000548175
      WBInteraction000548439
      WBInteraction000548776
      WBInteraction000553261
      WBInteraction000556499
      WBInteraction000556500
      WBInteraction000578476
      WBInteraction000583788
      WBInteraction000584216
  Map_info: Map: I Position: -8.18787 Error: 0.026165
    Positive: Positive_clone: Y23H5A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00011358
    WBPaper00036762
    WBPaper00037625
    WBPaper00038491
    WBPaper00039233
    WBPaper00041089
    WBPaper00043421
    WBPaper00046703
    WBPaper00055090
    WBPaper00065040
  Remark: Sequence connection from [Broadbent ID], 02/06/12 krb.
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene