WormBase Tree Display for Gene: WBGene00000122
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| WBGene00000122 | SMap | S_parent | Sequence | M18 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | aly-3 | Person_evidence | WBPerson297 | |||||
| WBPerson4981 | |||||||||
| Sequence_name | M18.7 | ||||||||
| Molecular_name | M18.7a | ||||||||
| M18.7a.1 | |||||||||
| CE06198 | |||||||||
| M18.7b | |||||||||
| Other_name | CELE_M18.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | aly-3 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00000122 | |||||
| WormFlux | gene | WBGene00000122 | |||||||
| NDB | locus_tag | CELE_M18.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000122|UniProtKB=Q21559 | |||||||
| family | PTHR19965 | ||||||||
| NCBI | gene | 178157 | |||||||
| RefSeq | protein | NR_003454.1 | |||||||
| NM_001083228.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF313312 | |||||||
| TrEMBL | UniProtAcc | Q21559 | |||||||
| UniProt_GCRP | UniProtAcc | Q21559 | |||||||
| RNAcentral | URSid | URS0000253FBA | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aly | ||||||||
| Allele (33) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00072102 | ||||||||
| 00072103 | |||||||||
| 00072104 | |||||||||
| 00072105 | |||||||||
| 00106836 | |||||||||
| Contained_in_operon | CEOP4496 | ||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00000120 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000121 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015329 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | aly-3 encodes an RRM motif-containing protein orthologous to human THOC4 (OMIM:604171), and paralogous to ALY-1 and ALY-2; by orthology, ALY-3 is thought to promote recruitment of mRNA export factor to mRNAs; however, ALY-3 has no grossly obvious function in four-way RNAi assays of ALY-1/-3 and W04D2.6, and aly-3(RNAi) had no obvious effect on nuclear retention of tra-2 mRNA in the absence of TRA-1. | Paper_evidence | WBPaper00030790 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 09 Dec 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be located in nucleus. Is an ortholog of human ALYREF (Aly/REF export factor). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M18.7a | |||||||
| Corresponding_transcript (2) | |||||||||
| Other_sequence (31) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr13880 | ||||||||
| Expr1015108 | |||||||||
| Expr1030068 | |||||||||
| Expr1154717 | |||||||||
| Expr2009318 | |||||||||
| Expr2027554 | |||||||||
| Drives_construct | WBCnstr00037716 | ||||||||
| Construct_product | WBCnstr00037716 | ||||||||
| WBCnstr00040228 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (130) | |||||||||
| Interaction | WBInteraction000029909 | ||||||||
| WBInteraction000224472 | |||||||||
| WBInteraction000340701 | |||||||||
| WBInteraction000341019 | |||||||||
| WBInteraction000345621 | |||||||||
| WBInteraction000381652 | |||||||||
| WBInteraction000392588 | |||||||||
| WBInteraction000393863 | |||||||||
| WBInteraction000405205 | |||||||||
| WBInteraction000413569 | |||||||||
| WBInteraction000417466 | |||||||||
| WBInteraction000428933 | |||||||||
| WBInteraction000431324 | |||||||||
| WBInteraction000435384 | |||||||||
| WBInteraction000446110 | |||||||||
| WBInteraction000464549 | |||||||||
| WBInteraction000466111 | |||||||||
| WBInteraction000471178 | |||||||||
| WBInteraction000473380 | |||||||||
| WBInteraction000474284 | |||||||||
| WBInteraction000474713 | |||||||||
| WBInteraction000475437 | |||||||||
| WBInteraction000540013 | |||||||||
| WBInteraction000543910 | |||||||||
| WBInteraction000552994 | |||||||||
| WBInteraction000559405 | |||||||||
| WBInteraction000561963 | |||||||||
| WBInteraction000562681 | |||||||||
| WBInteraction000568119 | |||||||||
| WBInteraction000570345 | |||||||||
| WBInteraction000571405 | |||||||||
| WBInteraction000575314 | |||||||||
| WBInteraction000579849 | |||||||||
| WBInteraction000582166 | |||||||||
| Map_info | Map | IV | Position | 5.72967 | Error | 0.002435 | |||
| Positive | Positive_clone | M18 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5514 | |||||||
| 5519 | |||||||||
| 5280 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00013477 | ||||||||
| WBPaper00029295 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063792 | |||||||||
| WBPaper00064012 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
