WormBase Tree Display for Gene: WBGene00003924

WBGene00003924 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: Y110A7A
  Identity: Version: 1
    Name: CGC_name: pas-3 Person_evidence: WBPerson1551
      Sequence_name: Y110A7A.14
      Molecular_name: Y110A7A.14
        Y110A7A.14.1
        CE30307
      Other_name: CELE_Y110A7A.14 Accession_evidence: NDB BX284601
      Public_name: pas-3
    DB_info: Database: AceView gene 1F674
        WormQTL gene WBGene00003924
        WormFlux gene WBGene00003924
        NDB locus_tag CELE_Y110A7A.14
        Panther gene CAEEL|WormBase=WBGene00003924|UniProtKB=Q9N599
          family PTHR11599
        NCBI gene 172139
        RefSeq protein NM_001392262.1
        SwissProt UniProtAcc Q9N599
        TREEFAM TREEFAM_ID TF106209
        UniProt_GCRP UniProtAcc Q9N599
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pas
    Allele: WBVar02146649
      WBVar00636136
      WBVar00636137
      WBVar00636138
      WBVar00333786
      WBVar00333787
      WBVar01499786
      WBVar01498959
    RNASeq_FPKM (74)
    GO_annotation (14)
    Contained_in_operon: CEOP1216
    Ortholog (35)
    Paralog (13)
    Structured_description: Concise_description: pas-3 encodes a proteasome subunit alpha type-4 that affects embryonic viability, growth, fertility, and locomotion. Paper_evidence: WBPaper00004402
            WBPaper00006395
          Curator_confirmed: WBPerson48
            WBPerson1843
          Date_last_updated: 09 Nov 2011 00:00:00
      Automated_description: Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Is an ortholog of human PSMA4 (proteasome 20S subunit alpha 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y110A7A.14
    Corresponding_transcript: Y110A7A.14.1
    Other_sequence: AYC00265_1
      EV854326.1
      ES412698.1
      Dviv_isotig17607
      EX008310.1
      FF681817.1
      CJC03427_1
      NB06526
      EX916740.1
      ES566519.1
      ES570678.1
      HG08647
      PTC03294_1
      SS01273
      NBC00377_1
      TSC00303_1
      FG620465.1
      Tcir_isotig07851
      TS03650
      MP00111
      GP01892
      FD514179.1
      FC811838.1
      SFC00055_1
      ES408925.1
      HG07425
      BU088218.1
      SSC00905_1
      EX013238.1
      FG620456.1
      ES413751.1
      ES411616.1
      MP01446
      CR00069
      DW718357.1
      HSC00348_1
      JI179474.1
      FG589168.1
      PT03916
      GP02387
      HGC01425_1
      FC811557.1
      Oden_isotig13262
      MJC00532_1
      XI00425
      CR01898
      Oden_isotig13261
      SRC00703_1
      FC816349.1
      JK314797.1
      GPC01719_1
      HS00458
      MJ01028
      Acan_isotig22056
      JI178516.1
      Dviv_isotig17606
      JI460682.1
      BU087556.1
      FC815287.1
      ACC05745_1
      MIC07745_1
      FC809925.1
      CRC02116_1
      AM743803.1
      XIC01988_1
      ES412408.1
      RSC00234_1
      EX014118.1
      TS00797
      FC813067.1
      GPC02851_1
      DI00221
      ES740058.1
      SS01905
      Tcol_isotig12507
      DIC00849_1
      Acan_isotig11447
      ES411638.1
      HG02443
      BQ579836.1
      BXC00767_1
      GW411267.1
      FC817419.1
      MI08334
      SR00910
      Acan_isotig05817
      ES412850.1
      FC818784.1
      CR08629
      MPC00451_1
      AE01465
      JI480409.1
      HG10893
      BUC01198_1
      TDC03288_1
      PPC02878_1
      FC817111.1
      HGC03523_1
      EX008295.1
      FC815998.1
      ES414232.1
      EX910523.1
      RS06043
      HBC00992_1
      PSC04160_1
      CBC01529_1
      CSC00076_1
      Hbac_isotig02768
      Acan_isotig16374
      HG05561
      NB06641
      AE04486
      DVC00471_1
      NAC01793_1
      HG05554
      SSC04244_1
    Associated_feature: WBsf649139
      WBsf219369
  Experimental_info: RNAi_result (27)
    Expr_pattern: Expr1014892
      Expr1031857
      Expr1158855
      Expr2014742
      Expr2032976
    Drives_construct: WBCnstr00035794
    Construct_product: WBCnstr00035794
    Microarray_results (21)
    Expression_cluster (144)
    Interaction: WBInteraction000034642
      WBInteraction000035804
      WBInteraction000037150
      WBInteraction000037151
      WBInteraction000037152
      WBInteraction000037388
      WBInteraction000038004
      WBInteraction000038767
      WBInteraction000039207
      WBInteraction000041393
      WBInteraction000041454
      WBInteraction000044855
      WBInteraction000047654
      WBInteraction000047878
      WBInteraction000049012
      WBInteraction000049522
      WBInteraction000049523
      WBInteraction000049524
      WBInteraction000049525
      WBInteraction000049526
      WBInteraction000049527
      WBInteraction000049528
      WBInteraction000049529
      WBInteraction000049530
      WBInteraction000049531
      WBInteraction000049532
      WBInteraction000049533
      WBInteraction000049534
      WBInteraction000049535
      WBInteraction000049536
      WBInteraction000049537
      WBInteraction000101258
      WBInteraction000101411
      WBInteraction000101471
      WBInteraction000102292
      WBInteraction000102679
      WBInteraction000102880
      WBInteraction000103063
      WBInteraction000103821
      WBInteraction000104380
      WBInteraction000105417
      WBInteraction000106208
      WBInteraction000106309
      WBInteraction000106506
      WBInteraction000109026
      WBInteraction000109810
      WBInteraction000109887
      WBInteraction000110915
      WBInteraction000110961
      WBInteraction000111124
      WBInteraction000111208
      WBInteraction000111375
      WBInteraction000111457
      WBInteraction000111458
      WBInteraction000111537
      WBInteraction000111542
      WBInteraction000111556
      WBInteraction000111568
      WBInteraction000111577
      WBInteraction000111599
      WBInteraction000111621
      WBInteraction000111630
      WBInteraction000111638
      WBInteraction000111647
      WBInteraction000111657
      WBInteraction000111727
      WBInteraction000111751
      WBInteraction000112081
      WBInteraction000112082
      WBInteraction000114268
      WBInteraction000116282
      WBInteraction000122451
      WBInteraction000125692
      WBInteraction000125700
      WBInteraction000125851
      WBInteraction000136731
      WBInteraction000144727
      WBInteraction000146199
      WBInteraction000148967
      WBInteraction000148969
      WBInteraction000149774
      WBInteraction000149843
      WBInteraction000149844
      WBInteraction000153582
      WBInteraction000154282
      WBInteraction000154283
      WBInteraction000154284
      WBInteraction000159847
      WBInteraction000161387
      WBInteraction000167309
      WBInteraction000168069
      WBInteraction000168329
      WBInteraction000180051
      WBInteraction000182370
      WBInteraction000183016
      WBInteraction000183924
      WBInteraction000185441
      WBInteraction000186406
      WBInteraction000192517
      WBInteraction000192891
      WBInteraction000194085
      WBInteraction000194746
      WBInteraction000196275
      WBInteraction000198928
      WBInteraction000199717
      WBInteraction000204346
      WBInteraction000215670
      WBInteraction000221190
      WBInteraction000222248
      WBInteraction000228485
      WBInteraction000228486
      WBInteraction000229210
      WBInteraction000248907
      WBInteraction000274642
      WBInteraction000308767
      WBInteraction000327016
      WBInteraction000333993
      WBInteraction000334845
      WBInteraction000338239
      WBInteraction000342758
      WBInteraction000345758
      WBInteraction000350722
      WBInteraction000361213
      WBInteraction000377305
      WBInteraction000380631
      WBInteraction000381945
      WBInteraction000389617
      WBInteraction000395895
      WBInteraction000398297
      WBInteraction000399104
      WBInteraction000405430
      WBInteraction000408225
      WBInteraction000415481
      WBInteraction000429946
      WBInteraction000432289
      WBInteraction000442410
      WBInteraction000448418
      WBInteraction000464585
      WBInteraction000466598
      WBInteraction000466766
      WBInteraction000467427
      WBInteraction000467710
      WBInteraction000468224
      WBInteraction000468421
      WBInteraction000468655
      WBInteraction000469150
      WBInteraction000470020
      WBInteraction000470799
      WBInteraction000471332
      WBInteraction000471481
      WBInteraction000473084
      WBInteraction000473168
      WBInteraction000474556
      WBInteraction000474989
      WBInteraction000475211
      WBInteraction000501168
      WBInteraction000501169
      WBInteraction000517644
      WBInteraction000517730
      WBInteraction000522674
      WBInteraction000539614
      WBInteraction000542593
      WBInteraction000542624
      WBInteraction000563306
      WBInteraction000567934
      WBInteraction000577662
      WBInteraction000578718
      WBInteraction000580219
      WBInteraction000582528
      WBInteraction000583069
      WBInteraction000585003
  Map_info: Map: I Position: -0.41002 Error: 0.00058
    Positive: Positive_clone: Y110A7A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031224
    WBPaper00038491
    WBPaper00048675
    WBPaper00055090
    WBPaper00056008
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene