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WormBase Tree Display for Gene: WBGene00008891

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Name Class

WBGene00008891SMapS_parentSequenceF16H6
IdentityVersion2
NameCGC_nameclec-42Person_evidenceWBPerson655
Sequence_nameF16H6.1
Molecular_nameF16H6.1
F16H6.1.1
CE18597
Other_nameCELE_F16H6.1Accession_evidenceNDBBX284605
Public_nameclec-42
DB_infoDatabaseAceViewgene5S673
WormQTLgeneWBGene00008891
WormFluxgeneWBGene00008891
NDBlocus_tagCELE_F16H6.1
PanthergeneCAEEL|WormBase=WBGene00008891|UniProtKB=Q9XV91
familyPTHR22991
NCBIgene180189
RefSeqproteinNM_075156.4
TREEFAMTREEFAM_IDTF351663
TrEMBLUniProtAccQ9XV91
UniProt_GCRPUniProtAccQ9XV91
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
229 Apr 2005 13:53:46WBPerson2970Name_changeCGC_nameclec-42
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
Allele (81)
RNASeq_FPKM (74)
OrthologWBGene00031014Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00138451Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00118481Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00117518Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00190088Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00058975Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
CBOVI.g636Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4605Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18408Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g15776Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g14229Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g18068Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1854Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14109Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g21861Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g9518Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00225.g7373Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_06970.g20600Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_V.g19626Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold461.g1492Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02980.g28630Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_017708Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00644Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01294Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04334Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09530Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10034Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g10755Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50272600Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50273000Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50273100Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50286000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g17636Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00090674Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00092755Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00093626Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00094198Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00094223Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00094226Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00094324Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00094364Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00094757Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00094758Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00094763Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00095335Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00099573Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00099582Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00099584Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00101060Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00101173Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00102635Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00102637Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00102645Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00102649Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00103431Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00111773Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00203683Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275137Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275520Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275536Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275539Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275542Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275755Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275777Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00276599Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00276684Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00276687Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00276690Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00277350Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00277932Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00280153Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281064Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281273Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281471Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281740Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281760Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00282834Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00259062Strongyloides rattiFrom_analysisWormBase-Compara
Paralog (52)
Structured_descriptionAutomated_descriptionExpressed in int1DL; int1DR; int1VL; int1VR; and neurons. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF16H6.1
Corresponding_transcriptF16H6.1.1
Associated_featureWBsf647675
WBsf1002843
WBsf1021424
WBsf233158
Experimental_infoRNAi_result (4)
Expr_patternExpr3375
Expr15813
Expr15814
Expr1021726
Expr1148794
Expr2010175
Expr2028417
Drives_constructWBCnstr00011372
WBCnstr00032613
WBCnstr00042533
Construct_productWBCnstr00032613
Microarray_results (18)
Expression_cluster (224)
InteractionWBInteraction000137268
WBInteraction000185339
WBInteraction000191937
WBInteraction000192549
WBInteraction000200854
WBInteraction000208466
WBInteraction000211470
WBInteraction000213476
WBInteraction000221078
WBInteraction000227322
WBInteraction000285101
WBInteraction000285725
WBInteraction000289212
WBInteraction000306180
WBInteraction000324426
WBInteraction000327869
WBInteraction000328502
WBInteraction000335042
WBInteraction000335393
WBInteraction000336825
WBInteraction000350764
WBInteraction000356993
WBInteraction000358791
WBInteraction000370696
WBInteraction000378563
WBInteraction000388523
WBInteraction000392026
WBInteraction000396626
WBInteraction000397802
WBInteraction000400114
WBInteraction000400433
WBInteraction000404575
WBInteraction000404797
WBInteraction000413307
WBInteraction000414637
WBInteraction000419272
WBInteraction000423595
WBInteraction000437038
WBInteraction000439435
WBInteraction000447457
WBInteraction000448771
WBInteraction000453840
WBInteraction000558048
Map_infoMapVPosition14.7815Error0.044228
PositivePositive_cloneF16H6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00026629
WBPaper00038491
WBPaper00057576
WBPaper00061178
WBPaper00061236
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene