WormBase Tree Display for Gene: WBGene00016266

WBGene00016266 SMap: S_parent: Sequence: C30F12
  Identity: Version: 2
    Name: CGC_name: idhg-2 Person_evidence: WBPerson1983
            WBPerson261
      Sequence_name: C30F12.7
      Molecular_name: C30F12.7
        C30F12.7.1
        CE16887
      Other_name: CELE_C30F12.7 Accession_evidence: NDB BX284601
      Public_name: idhg-2
    DB_info: Database: AceView gene 1H553
        WormQTL gene WBGene00016266
        WormFlux gene WBGene00016266
        NDB locus_tag CELE_C30F12.7
        Panther gene CAEEL|WormBase=WBGene00016266|UniProtKB=Q95YD8
          family PTHR11835
        NCBI gene 172430
        RefSeq protein NM_059588.8
        TREEFAM TREEFAM_ID TF315033
        TrEMBL UniProtAcc Q95YD8
        UniProt_GCRP UniProtAcc Q95YD8
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 08 Dec 2011 12:14:43 WBPerson2970 Name_change: CGC_name: idhg-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: idhg
    Allele (25)
    Strain: WBStrain00032631
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog (39)
    Paralog: WBGene00007993 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00009440 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00009664 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: C30F12.7 encodes the C. elegans homolog of the gamma subunit of an NAD+-dependent mitochondrial isocitrate dehydrogenase; by homology, the product of C30F12.7 is predicted to catalyze the formation of alpha-ketoglutarate from isocitrate as part of the citric acid cycle. Curator_confirmed: WBPerson1843
          Date_last_updated: 26 Oct 2011 00:00:00
      Automated_description: Predicted to enable NAD binding activity and magnesium ion binding activity. Predicted to be involved in isocitrate metabolic process and tricarboxylic acid cycle. Predicted to be located in mitochondrion. Is an ortholog of human IDH3G (isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C30F12.7
    Corresponding_transcript: C30F12.7.1
    Other_sequence (69)
    Associated_feature: WBsf984042
      WBsf984043
      WBsf217927
  Experimental_info: RNAi_result: WBRNAi00084390 Inferred_automatically: RNAi_primary
      WBRNAi00029360 Inferred_automatically: RNAi_primary
      WBRNAi00041552 Inferred_automatically: RNAi_primary
      WBRNAi00003042 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027079
      Expr1145570
      Expr2012674
      Expr2030910
    Drives_construct: WBCnstr00028205
    Construct_product: WBCnstr00028205
    Microarray_results: SMD_C30F12.7
      187821_at
      A_12_P111419
      Aff_C30F12.7
      GPL13394_WBGene00016266
      GPL13914_C30F12.7
      GPL14144_C30F12.7_710-769_0.947_5_C
      GPL14144_C30F12.7_855-914_0.903_21_B
      GPL14144_C30F12.7_956-1015_0.955_1_A
      GPL19516_CGZ0006766
      GPL21109_C30F12.7
      GPL3518_CE16887
      GPL8304_CE_WBGene00016266_A
      GPL8304_CE_WBGene00016266_B
      GPL8673_C30F12_7P00057
      GPL8673_C30F12_7P00321
      GPL8673_C30F12_7P00691
      GPL9450_C30F12.7
      cea2.p.02837
    Expression_cluster (173)
    Interaction: WBInteraction000044808
      WBInteraction000103220
      WBInteraction000106528
      WBInteraction000107039
      WBInteraction000122398
      WBInteraction000138797
      WBInteraction000139596
      WBInteraction000139690
      WBInteraction000141519
      WBInteraction000142099
      WBInteraction000154222
      WBInteraction000155912
      WBInteraction000155947
      WBInteraction000155964
      WBInteraction000155965
      WBInteraction000155966
      WBInteraction000155967
      WBInteraction000155968
      WBInteraction000155969
      WBInteraction000155970
      WBInteraction000155971
      WBInteraction000155972
      WBInteraction000155973
      WBInteraction000155974
      WBInteraction000155975
      WBInteraction000155976
      WBInteraction000155977
      WBInteraction000155978
      WBInteraction000155979
      WBInteraction000155980
      WBInteraction000155981
      WBInteraction000155982
      WBInteraction000155983
      WBInteraction000155984
      WBInteraction000155985
      WBInteraction000155986
      WBInteraction000155987
      WBInteraction000162042
      WBInteraction000175830
      WBInteraction000191807
      WBInteraction000198278
      WBInteraction000199924
      WBInteraction000205776
      WBInteraction000213798
      WBInteraction000218503
      WBInteraction000220501
      WBInteraction000228621
      WBInteraction000229038
      WBInteraction000233041
      WBInteraction000234563
      WBInteraction000237916
      WBInteraction000240941
      WBInteraction000246950
      WBInteraction000250480
      WBInteraction000250855
      WBInteraction000255317
      WBInteraction000255359
      WBInteraction000258921
      WBInteraction000259613
      WBInteraction000263627
      WBInteraction000266150
      WBInteraction000269470
      WBInteraction000272786
      WBInteraction000273476
      WBInteraction000275994
      WBInteraction000282795
      WBInteraction000284828
      WBInteraction000285558
      WBInteraction000286550
      WBInteraction000289268
      WBInteraction000291798
      WBInteraction000295367
      WBInteraction000295731
      WBInteraction000296737
      WBInteraction000296875
      WBInteraction000297063
      WBInteraction000297322
      WBInteraction000300430
      WBInteraction000301202
      WBInteraction000302342
      WBInteraction000304774
      WBInteraction000305950
      WBInteraction000307672
      WBInteraction000310247
      WBInteraction000310327
      WBInteraction000313489
      WBInteraction000316894
      WBInteraction000322152
      WBInteraction000323296
      WBInteraction000325244
      WBInteraction000327326
      WBInteraction000327402
      WBInteraction000327563
      WBInteraction000329365
      WBInteraction000330043
      WBInteraction000330566
      WBInteraction000331355
      WBInteraction000331526
      WBInteraction000331878
      WBInteraction000333329
      WBInteraction000334266
      WBInteraction000340046
      WBInteraction000349881
      WBInteraction000351602
      WBInteraction000353431
      WBInteraction000353941
      WBInteraction000360856
      WBInteraction000363237
      WBInteraction000363536
      WBInteraction000364886
      WBInteraction000364887
      WBInteraction000364996
      WBInteraction000366300
      WBInteraction000367580
      WBInteraction000375701
      WBInteraction000377133
      WBInteraction000377264
      WBInteraction000379459
      WBInteraction000383760
      WBInteraction000384836
      WBInteraction000384902
      WBInteraction000384947
      WBInteraction000387195
      WBInteraction000387287
      WBInteraction000388489
      WBInteraction000389335
      WBInteraction000390056
      WBInteraction000391184
      WBInteraction000393833
      WBInteraction000394524
      WBInteraction000396214
      WBInteraction000403395
      WBInteraction000403651
      WBInteraction000404054
      WBInteraction000404480
      WBInteraction000408566
      WBInteraction000410832
      WBInteraction000412574
      WBInteraction000412684
      WBInteraction000412769
      WBInteraction000413179
      WBInteraction000417625
      WBInteraction000420575
      WBInteraction000420578
      WBInteraction000422805
      WBInteraction000422977
      WBInteraction000425481
      WBInteraction000427719
      WBInteraction000427849
      WBInteraction000428175
      WBInteraction000429450
      WBInteraction000430524
      WBInteraction000430802
      WBInteraction000431582
      WBInteraction000432554
      WBInteraction000434793
      WBInteraction000435609
      WBInteraction000437375
      WBInteraction000437739
      WBInteraction000439581
      WBInteraction000439923
      WBInteraction000440182
      WBInteraction000440647
      WBInteraction000442855
      WBInteraction000445452
      WBInteraction000446386
      WBInteraction000446434
      WBInteraction000447557
      WBInteraction000447837
      WBInteraction000450692
      WBInteraction000452618
      WBInteraction000454056
      WBInteraction000457044
      WBInteraction000462174
      WBInteraction000462252
      WBInteraction000462851
      WBInteraction000474380
      WBInteraction000474818
      WBInteraction000475170
      WBInteraction000566382
      WBInteraction000566661
      WBInteraction000567130
      WBInteraction000567326
      WBInteraction000571782
      WBInteraction000583391
      WBInteraction000585632
  Map_info: Map: I Position: 1.58364
    Positive: Positive_clone: C30F12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027145
    WBPaper00028451
    WBPaper00038491
    WBPaper00051770
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene