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WormBase Tree Display for Gene: WBGene00001481

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Name Class

WBGene00001481EvidenceCGC_data_submission
SMapS_parentSequenceY54E10A
IdentityVersion1
NameCGC_namefog-1Person_evidenceWBPerson261
Sequence_nameY54E10A.4
Molecular_name (13)
Other_namecpb-4
CELE_Y54E10A.4Accession_evidenceNDBBX284601
Public_namefog-1
DB_infoDatabaseAceViewgene1D785
WormQTLgeneWBGene00001481
WormFluxgeneWBGene00001481
NDBlocus_tagCELE_Y54E10A.4
PanthergeneCAEEL|WormBase=WBGene00001481|UniProtKB=G5EBS6
familyPTHR12566
NCBIgene171895
RefSeqproteinNM_001313541.3
NM_001313540.3
NM_001381585.1
NM_001381586.3
TREEFAMTREEFAM_IDTF317658
TrEMBLUniProtAccA0A0K3ATT1
G5EBS6
Q95XX9
A0A0K3AQU4
UniProt_GCRPUniProtAccG5EBS6
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:24WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfog
Reference_alleleWBVar00144581
Allele (139)
Possibly_affected_byWBVar02158428
Legacy_informatione1959sd : homozygous XX animals transformed into fertile females; homozygous and heterozygous XO animals are somatically male with both sperm and oocytes in germline. ES2 (adults). NA3.
See also e1959
[C.elegansII] e1959sd : homozygous XX animals transformed into fertile females; homozygous XO animals are somatically male, make oocytes in germ line; heterozygous XO animals are somatically male with both sperm and oocytes in germline. ES2 (adults). OA>10: e2121, e1959, e2122, q155, q253ts (fertile at 15C). [Barton and Kimble 1990; Ellis and Kimble 1995; JK; RE]
StrainWBStrain00022517
WBStrain00022535
WBStrain00022541
WBStrain00022595
WBStrain00022628
WBStrain00022633
WBStrain00022660
WBStrain00022661
WBStrain00004543
RNASeq_FPKM (74)
GO_annotation (26)
OrthologWBGene00056528Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00035332Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00146713Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00184964Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00147463Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00194343Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00145539Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00136441Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00128507Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00066597Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00054149Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00136414Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00040861Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00222740Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9247Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g15080Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g17643Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g15816Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g14182Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g18010Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16253Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g4701Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g21814Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g23475Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00029.g1714Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-fog-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g666Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold481.g1842Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8783Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02720.g27676Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_02844Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_23817Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_019828Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_10173000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g477Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00123001Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00247762Onchocerca volvulusFrom_analysisWormBase-Compara
ParalogWBGene00000770Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000771Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000772Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionfog-1 encodes a cytoplasmic polyadenylation element binding (CPEB) protein; FOG-1 is required for specification of the sperm fate; FOG-1 binds its own 3'-UTR and fog-1 expression is directly regulated by FBF-1 and FBF-2.Paper_evidenceWBPaper00004396
WBPaper00005045
WBPaper00026645
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated11 Apr 2014 00:00:00
Automated_descriptionEnables mRNA 3'-UTR binding activity. Involved in cell fate specification; germ-line sex determination; and spermatogenesis. Located in cytoplasm and nuclear periphery. Expressed in germ line.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY54E10A.4a
Y54E10A.4b
Y54E10A.4c
Y54E10A.4d
Corresponding_transcriptY54E10A.4a.1
Y54E10A.4a.2
Y54E10A.4b.1
Y54E10A.4c.1
Y54E10A.4d.1
Other_sequenceCRC04533_1
MH07524
Associated_featureWBsf028075
WBsf643133
WBsf656105
WBsf656106
WBsf217376
WBsf217377
Experimental_info (8)
Map_infoMapIPosition-4.47297Error0.001409
Well_ordered
PositivePositive_cloneY54E10AInferred_automaticallyFrom sequence, transcript, pseudogene data
NegativeOutside_rearrsDf4
Mapping_data2_point2502
Multi_point (19)
Pos_neg_data3183
8068
5693
6211
6228
6566
6627
8064
8533
Reference (141)
PictureWBPicture0000013095
MethodGene