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WormBase Tree Display for Gene: WBGene00001481

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Name Class

WBGene00001481EvidenceCGC_data_submission
SMapS_parentSequenceY54E10A
IdentityVersion1
NameCGC_namefog-1Person_evidenceWBPerson261
Sequence_nameY54E10A.4
Molecular_name (13)
Other_namecpb-4
CELE_Y54E10A.4Accession_evidenceNDBBX284601
Public_namefog-1
DB_infoDatabaseAceViewgene1D785
WormQTLgeneWBGene00001481
WormFluxgeneWBGene00001481
NDBlocus_tagCELE_Y54E10A.4
PanthergeneCAEEL|WormBase=WBGene00001481|UniProtKB=G5EBS6
familyPTHR12566
NCBIgene171895
RefSeqproteinNM_001313541.3
NM_001313540.3
NM_001381585.1
NM_001381586.3
TREEFAMTREEFAM_IDTF317658
TrEMBLUniProtAccA0A0K3ATT1
G5EBS6
Q95XX9
A0A0K3AQU4
UniProt_GCRPUniProtAccG5EBS6
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:24WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfog
Reference_alleleWBVar00144581
Allele (139)
Possibly_affected_byWBVar02158428
Legacy_informatione1959sd : homozygous XX animals transformed into fertile females; homozygous and heterozygous XO animals are somatically male with both sperm and oocytes in germline. ES2 (adults). NA3.
See also e1959
[C.elegansII] e1959sd : homozygous XX animals transformed into fertile females; homozygous XO animals are somatically male, make oocytes in germ line; heterozygous XO animals are somatically male with both sperm and oocytes in germline. ES2 (adults). OA>10: e2121, e1959, e2122, q155, q253ts (fertile at 15C). [Barton and Kimble 1990; Ellis and Kimble 1995; JK; RE]
StrainWBStrain00022517
WBStrain00022535
WBStrain00022541
WBStrain00022595
WBStrain00022628
WBStrain00022633
WBStrain00022660
WBStrain00022661
WBStrain00004543
RNASeq_FPKM (74)
GO_annotation (26)
Ortholog (37)
ParalogWBGene00000770Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000771Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000772Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionfog-1 encodes a cytoplasmic polyadenylation element binding (CPEB) protein; FOG-1 is required for specification of the sperm fate; FOG-1 binds its own 3'-UTR and fog-1 expression is directly regulated by FBF-1 and FBF-2.Paper_evidenceWBPaper00004396
WBPaper00005045
WBPaper00026645
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated11 Apr 2014 00:00:00
Automated_descriptionEnables mRNA 3'-UTR binding activity. Involved in cell fate specification; germ-line sex determination; and spermatogenesis. Located in cytoplasm and nuclear periphery. Expressed in germ line.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY54E10A.4a
Y54E10A.4b
Y54E10A.4c
Y54E10A.4d
Corresponding_transcriptY54E10A.4a.1
Y54E10A.4a.2
Y54E10A.4b.1
Y54E10A.4c.1
Y54E10A.4d.1
Other_sequenceCRC04533_1
MH07524
Associated_featureWBsf028075
WBsf643133
WBsf656105
WBsf656106
WBsf217376
WBsf217377
Experimental_infoRNAi_result (15)
Expr_pattern (11)
Construct_productWBCnstr00022307
Regulate_expr_clusterWBPaper00048762:FOG-1_associated
AntibodyWBAntibody00000874
WBAntibody00000966
Microarray_resultsSMD_Y54E10A_156.D
177117_at
A_12_P145725
A_12_P145726
Aff_Y54E10A_156.D
GPL13394_WBGene00001481
GPL13914_Y54E10A.4
GPL14144_Y54E10A.4b_1017-1076_0.889_38_C
GPL14144_Y54E10A.4b_1110-1169_0.903_29_A
GPL14144_Y54E10A.4b_1236-1295_0.886_40_B
GPL19516_CGZ0049017
GPL19516_CGZ0049018
GPL21109_Y54E10A.4a
GPL3518_CE27479
GPL3518_CE27480
GPL8304_CE_WBGene00001481_A
GPL8304_CE_WBGene00001481_B
GPL8673_Y54E10A_4aP00089
GPL8673_Y54E10A_4aP00573
GPL8673_Y54E10A_4aP01045
GPL8673_Y54E10A_4bP00364
GPL8673_Y54E10A_4bP00475
GPL8673_Y54E10A_4bP00544
GPL9450_Y54E10A.4a
GPL9450_Y54E10A.4b
cea2.d.07001
cea2.d.45063
Expression_cluster (148)
InteractionWBInteraction000000009
WBInteraction000000151
WBInteraction000000448
WBInteraction000001305
WBInteraction000002616
WBInteraction000003958
WBInteraction000028403
WBInteraction000028404
WBInteraction000029274
WBInteraction000029768
WBInteraction000030552
WBInteraction000052700
WBInteraction000126891
WBInteraction000126945
WBInteraction000127176
WBInteraction000139439
WBInteraction000145320
WBInteraction000145321
WBInteraction000160380
WBInteraction000160384
WBInteraction000166112
WBInteraction000166260
WBInteraction000166353
WBInteraction000187353
WBInteraction000215125
WBInteraction000252467
WBInteraction000252468
WBInteraction000300488
WBInteraction000319460
WBInteraction000424371
WBInteraction000502808
WBInteraction000502809
WBInteraction000502810
WBInteraction000502811
WBInteraction000502812
WBInteraction000502813
WBInteraction000517229
WBInteraction000517846
WBInteraction000517854
WBInteraction000517862
WBInteraction000517871
WBInteraction000518569
WBInteraction000518591
WBInteraction000524766
WBInteraction000524773
WBInteraction000524789
WBInteraction000541026
WBInteraction000550436
WBInteraction000550438
WBInteraction000550439
WBInteraction000550440
WBInteraction000550448
WBInteraction000550456
WBInteraction000550466
WBInteraction000550467
WBInteraction000550469
WBInteraction000550470
WBInteraction000550480
WBInteraction000550497
WBInteraction000550504
WBInteraction000550520
WBInteraction000550570
WBInteraction000550572
WBInteraction000550574
WBInteraction000550575
WBInteraction000550576
WBInteraction000550582
WBInteraction000550610
WBInteraction000550624
WBInteraction000550633
WBInteraction000550663
WBInteraction000555220
WBInteraction000576795
Map_infoMapIPosition-4.47297Error0.001409
Well_ordered
PositivePositive_cloneY54E10AInferred_automaticallyFrom sequence, transcript, pseudogene data
NegativeOutside_rearrsDf4
Mapping_data2_point2502
Multi_point (19)
Pos_neg_data3183
8068
5693
6211
6228
6566
6627
8064
8533
Reference (141)
PictureWBPicture0000013095
MethodGene