WormBase Tree Display for Gene: WBGene00003639
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| WBGene00003639 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K10C3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-49 | Person_evidence | WBPerson600 | |||||
| Sequence_name | K10C3.6 | ||||||||
| Molecular_name (17) | |||||||||
| Other_name | CELE_K10C3.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | nhr-49 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (78) | |||||||||
| Strain | WBStrain00031166 | ||||||||
| WBStrain00031167 | |||||||||
| WBStrain00031172 | |||||||||
| WBStrain00032408 | |||||||||
| WBStrain00034504 | |||||||||
| WBStrain00036136 | |||||||||
| WBStrain00040338 | |||||||||
| WBStrain00049816 | |||||||||
| WBStrain00051874 | |||||||||
| WBStrain00052029 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00008300 | ||||||||
| 00008301 | |||||||||
| 00008302 | |||||||||
| 00008303 | |||||||||
| 00008304 | |||||||||
| 00008305 | |||||||||
| 00008306 | |||||||||
| 00008307 | |||||||||
| 00034920 | |||||||||
| 00034921 | |||||||||
| 00034922 | |||||||||
| 00034923 | |||||||||
| 00034924 | |||||||||
| 00034925 | |||||||||
| 00034926 | |||||||||
| 00034927 | |||||||||
| 00034928 | |||||||||
| 00034929 | |||||||||
| 00034930 | |||||||||
| 00034931 | |||||||||
| 00034932 | |||||||||
| 00034933 | |||||||||
| 00034934 | |||||||||
| 00034935 | |||||||||
| 00034936 | |||||||||
| 00034937 | |||||||||
| 00034938 | |||||||||
| 00034939 | |||||||||
| 00034940 | |||||||||
| 00034941 | |||||||||
| 00034942 | |||||||||
| 00034943 | |||||||||
| 00034944 | |||||||||
| 00034945 | |||||||||
| 00034946 | |||||||||
| 00034947 | |||||||||
| 00034948 | |||||||||
| 00034949 | |||||||||
| 00034950 | |||||||||
| 00034951 | |||||||||
| 00111362 | |||||||||
| 00111363 | |||||||||
| 00111364 | |||||||||
| 00111365 | |||||||||
| Contained_in_operon | CEOP1566 | ||||||||
| Ortholog (37) | |||||||||
| Paralog (42) | |||||||||
| Structured_description | Concise_description | nhr-49 encodes a nuclear hormone receptor (NHR) related to the mammalian HNF4 (hepatocyte nuclear factor 4) family of NHRs; nhr-49 functions as a key regulator of fat metabolism and lifespan by regulating induction of beta-oxidation genes upon food deprivation and activation of stearoyl-CoA desaturase in fed animals, respectively; NHR-49 activates transcription in conjunction with the MDT-15 mediator subunit with which it physically interacts. | Paper_evidence | WBPaper00003416 | |||||
| WBPaper00005655 | |||||||||
| WBPaper00024532 | |||||||||
| WBPaper00025114 | |||||||||
| WBPaper00026800 | |||||||||
| WBPaper00027365 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Mar 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in determination of adult lifespan; positive regulation of transcription from RNA polymerase II promoter in response to stress; and regulation of fatty acid metabolic process. Located in cytoplasm and nucleus. Expressed in hypodermis; intestinal cell; intestine; muscle cell; and neurons. Used to study alcohol use disorder and obesity. Human ortholog(s) of this gene implicated in several diseases, including Fanconi renotubular syndrome 4; glucose metabolism disease (multiple); and liver disease (multiple). Is an ortholog of human HNF4A (hepatocyte nuclear factor 4 alpha). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00041098 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 06 Jun 2019 00:00:00 | ||||||||
| DOID:9970 | Homo sapiens | Paper_evidence | WBPaper00025114 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 Sep 2018 00:00:00 | ||||||||
| Potential_model | DOID:0111099 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5024) | |||||
| DOID:13809 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5024) | ||||||
| DOID:9993 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5024) | ||||||
| DOID:9352 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5024) | ||||||
| DOID:1686 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5024) | ||||||
| DOID:5082 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5024) | ||||||
| DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5024) | ||||||
| DOID:0080760 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5024) | ||||||
| Models_disease_asserted | WBDOannot00000610 | ||||||||
| WBDOannot00000707 | |||||||||
| WBDOannot00000708 | |||||||||
| Molecular_info | Corresponding_CDS | K10C3.6a | |||||||
| K10C3.6b | |||||||||
| K10C3.6c | |||||||||
| K10C3.6d | |||||||||
| K10C3.6e | |||||||||
| Corresponding_transcript | K10C3.6a.1 | ||||||||
| K10C3.6a.2 | |||||||||
| K10C3.6b.1 | |||||||||
| K10C3.6b.2 | |||||||||
| K10C3.6c.1 | |||||||||
| K10C3.6d.1 | |||||||||
| K10C3.6e.1 | |||||||||
| Other_sequence (69) | |||||||||
| Associated_feature (15) | |||||||||
| Transcription_factor | WBTranscriptionFactor000564 | ||||||||
| Experimental_info | RNAi_result (49) | ||||||||
| Expr_pattern | Expr9486 | ||||||||
| Expr10378 | |||||||||
| Expr12144 | |||||||||
| Expr16231 | |||||||||
| Expr1021226 | |||||||||
| Expr1031683 | |||||||||
| Expr1154213 | |||||||||
| Expr2014198 | |||||||||
| Expr2032439 | |||||||||
| Drives_construct | WBCnstr00015289 | ||||||||
| WBCnstr00020172 | |||||||||
| WBCnstr00035977 | |||||||||
| Construct_product | WBCnstr00014051 | ||||||||
| WBCnstr00016239 | |||||||||
| WBCnstr00020172 | |||||||||
| WBCnstr00021645 | |||||||||
| WBCnstr00021647 | |||||||||
| WBCnstr00035977 | |||||||||
| Regulate_expr_cluster | WBPaper00040134:nhr-49(RNAi)_regulated_protein | ||||||||
| WBPaper00053798:nhr-49(nr2041)_tBOOH_upregulated | |||||||||
| WBPaper00061530:nhr-49(e2144)_downregulated | |||||||||
| WBPaper00061530:nhr-49(e2144)_upregulated | |||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (104) | |||||||||
| SAGE_tag | SAGE:tgccgtttgt | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:gccggtttggtggtgca | Strand | Antisense | |||||||
| SAGE:cacaaccgaggtagatc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aaatcatctg | Strand | Antisense | |||||||
| SAGE:cacaaccgag | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tcgagaaatatgaaaaa | Strand | Antisense | |||||||
| SAGE:aatggattaa | Strand | Antisense | |||||||
| SAGE:tgccgtttgtggtgaca | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gatctttcgatggaaga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aatggattaattgtttt | Strand | Antisense | |||||||
| SAGE:gatctttcga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:attacaatca | Strand | Antisense | |||||||
| Interaction (374) | |||||||||
| WBProcess | WBbiopr:00000001 | ||||||||
| WBbiopr:00000121 | |||||||||
| Map_info | Map | I | Position | 3.96404 | Error | 0.005389 | |||
| Positive | Positive_clone | K10C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5149 | |||||||
| 4447 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (157) | |||||||||
| Picture | WBPicture0000013096 | ||||||||
| WBPicture0000013097 | |||||||||
| WBPicture0000013098 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
