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WormBase Tree Display for Gene: WBGene00015735

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Name Class

WBGene00015735SMapS_parentSequenceC13B9
IdentityVersion3
NameCGC_namepdfr-1Paper_evidenceWBPaper00031656
Person_evidenceWBPerson3516
WBPerson3480
Sequence_nameC13B9.4
Molecular_name (23)
Other_nameseb-1Person_evidenceWBPerson3006
WBPerson1263
CELE_C13B9.4Accession_evidenceNDBBX284603
Public_namepdfr-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
218 Apr 2008 13:26:44WBPerson2970Name_changeCGC_namepdfr-1
329 Aug 2012 16:49:31WBPerson2970Name_changeOther_nameseb-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpdfr
Allele (246)
Strain (11)
RNASeq_FPKM (74)
GO_annotation00054021
00054022
00054023
00054024
00054025
00054026
00054027
00054028
00054029
00054030
00054031
00054032
00054033
00054034
00054035
00054036
00054037
00054038
00054039
00054040
00054041
00054042
00054043
00054044
00054045
00054046
00054047
00104936
00121519
00121520
00121521
OrthologWBGene00054684Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00036480Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00139020Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00133710Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00103024Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00222429Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6120Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3563Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g13145Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g16580Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g393Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g1335Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1226Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g5922Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13619Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g14510Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29703Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16108Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00036.g2040Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_11474.g23261Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_14332.g24604Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-pdfr-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00371.g10312Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_12443Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_009870Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03719Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g22584Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30242700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7986Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246014Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00109326Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00261612Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00286952Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0260753Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-991123-8Danio rerioFrom_analysisInparanoid
Panther
ZFIN:ZDB-GENE-060503-420Danio rerioFrom_analysisInparanoid
SonicParanoid
HGNC:1440Homo sapiensFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
HGNC:9608Homo sapiensFrom_analysisInparanoid
OrthoInspector
Panther
SonicParanoid
HGNC:16709Homo sapiensFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
MGI:101950Mus musculusFrom_analysisInparanoid
OrthoInspector
SonicParanoid
MGI:97801Mus musculusFrom_analysisInparanoid
OMA
OrthoInspector
Panther
SonicParanoid
MGI:1926944Mus musculusFrom_analysisInparanoid
OrthoInspector
SonicParanoid
MGI:2180917Mus musculusFrom_analysisInparanoid
OrthoInspector
Panther
SonicParanoid
RGD:2255Rattus norvegicusFrom_analysisInparanoid
OrthoInspector
SonicParanoid
RGD:3442Rattus norvegicusFrom_analysisInparanoid
OMA
OrthoInspector
Panther
SonicParanoid
RGD:620612Rattus norvegicusFrom_analysisOrthoInspector
Panther
SonicParanoid
RGD:621001Rattus norvegicusFrom_analysisInparanoid
OrthoInspector
SonicParanoid
ParalogWBGene00007664Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00014035Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002251Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00002252Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009304Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017947Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017948Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionpdfr-1 encodes, by alternative splicing, three isoforms of a G-protein-coupled receptor (GPCR) required for normal locomotion; PDFR-1 is orthologous to Drosophila pigment dispersing factor (PDF) receptors, and to human CALCR (OMIM:114131, associated with susceptibility to osteoporesis); pdfr-1 is expressed in all body wall muscles and many head and tail neurons; the C. elegans neuropeptides PDF-1a, PDF-1b, or PDF-2 (orthologous to Drosophila PDF) activated PDFR-1 receptors with dose-dependent nanomolar potency; in vivo, excess PDF-2 induces a movement phenotype like that seen in a pdf-1 null mutant, indicating that PDF-1a/b and PDF-2 exert opposite effects on PDFR-1.Paper_evidenceWBPaper00012979
WBPaper00028902
WBPaper00031656
Curator_confirmedWBPerson1843
WBPerson1823
WBPerson567
Date_last_updated14 Jul 2008 00:00:00
Automated_descriptionEnables calcitonin family receptor activity. Involved in several processes, including locomotory behavior; signal transduction; and sleep. Located in plasma membrane. Expressed in several structures, including I1 neuron; RMEV; ganglia; mechanosensory neurons; and vulD. Human ortholog(s) of this gene implicated in bone disease (multiple); hereditary lymphedema; and primary failure of tooth eruption. Is an ortholog of human CALCR (calcitonin receptor); CALCRL (calcitonin receptor like receptor); and PTH1R (parathyroid hormone 1 receptor).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0080020Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9608)
DOID:0050580Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:16709)
DOID:0060387Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9608)
DOID:2256Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9608)
DOID:0111341Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9608)
DOID:11476Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:1440)
DOID:0111732Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9608)
Molecular_infoCorresponding_CDSC13B9.4a
C13B9.4b
C13B9.4c
C13B9.4d
C13B9.4e
Corresponding_CDS_historyC13B9.4:wp127
Corresponding_transcript (13)
Other_sequence (25)
Associated_feature (24)
Experimental_infoRNAi_resultWBRNAi00010677Inferred_automaticallyRNAi_primary
WBRNAi00005367Inferred_automaticallyRNAi_primary
WBRNAi00027171Inferred_automaticallyRNAi_primary
WBRNAi00040427Inferred_automaticallyRNAi_primary
WBRNAi00024543Inferred_automaticallyRNAi_primary
WBRNAi00024544Inferred_automaticallyRNAi_primary
WBRNAi00028838Inferred_automaticallyRNAi_primary
Expr_pattern (15)
Drives_constructWBCnstr00002179
WBCnstr00002180
WBCnstr00004248
WBCnstr00004988
WBCnstr00015834
WBCnstr00015836
WBCnstr00019100
WBCnstr00021690
WBCnstr00021702
WBCnstr00028610
Construct_product (12)
AntibodyWBAntibody00001399
Microarray_results (36)
Expression_cluster (224)
Interaction (12)
Map_infoMapIIIPosition-1.02511Error0.00506
PositivePositive_cloneC13B9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (36)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene