WormBase Tree Display for Gene: WBGene00015389
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WBGene00015389 | SMap | S_parent | Sequence | C03F11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | scav-1 | |||||||
Sequence_name | C03F11.3 | ||||||||
Molecular_name | C03F11.3 | ||||||||
C03F11.3.1 | |||||||||
CE37606 | |||||||||
Other_name | CELE_C03F11.3 | Accession_evidence | NDB | BX284606 | |||||
Public_name | scav-1 | ||||||||
DB_info | Database | AceView | gene | XG16 | |||||
WormQTL | gene | WBGene00015389 | |||||||
WormFlux | gene | WBGene00015389 | |||||||
NDB | locus_tag | CELE_C03F11.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00015389|UniProtKB=Q11124 | |||||||
family | PTHR11923 | ||||||||
NCBI | gene | 180812 | |||||||
RefSeq | protein | NM_076518.7 | |||||||
SwissProt | UniProtAcc | Q11124 | |||||||
UniProt_GCRP | UniProtAcc | Q11124 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 08 Mar 2010 11:14:55 | WBPerson2970 | Name_change | CGC_name | scav-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | scav | ||||||||
Allele (48) | |||||||||
Strain | WBStrain00037026 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00057280 | ||||||||
00057281 | |||||||||
00057282 | |||||||||
00057283 | |||||||||
00057284 | |||||||||
00121289 | |||||||||
Ortholog (34) | |||||||||
Paralog | WBGene00008542 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00008692 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00011076 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00013039 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00013578 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable scavenger receptor activity. Predicted to be involved in endocytosis. Predicted to be located in cytoplasm. Is an ortholog of human SCARB1 (scavenger receptor class B member 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C03F11.3 | |||||||
Corresponding_CDS_history | C03F11.3:wp133 | ||||||||
Corresponding_transcript | C03F11.3.1 | ||||||||
Other_sequence (17) | |||||||||
Associated_feature | WBsf653975 | ||||||||
WBsf979087 | |||||||||
WBsf1005257 | |||||||||
WBsf237372 | |||||||||
WBsf237373 | |||||||||
Experimental_info | RNAi_result | WBRNAi00028396 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00078833 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00039531 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010059 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1021528 | ||||||||
Expr1036588 | |||||||||
Expr1143631 | |||||||||
Expr2015614 | |||||||||
Expr2033849 | |||||||||
Drives_construct | WBCnstr00028883 | ||||||||
Construct_product | WBCnstr00028883 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (145) | |||||||||
Interaction | WBInteraction000171409 | ||||||||
WBInteraction000204284 | |||||||||
WBInteraction000305782 | |||||||||
WBInteraction000409092 | |||||||||
WBProcess | WBbiopr:00000039 | ||||||||
Map_info | Map | X | Position | -5.36753 | Error | 0.014966 | |||
Positive | Positive_clone | C03F11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00010266 | ||||||||
WBPaper00018248 | |||||||||
WBPaper00018249 | |||||||||
WBPaper00032930 | |||||||||
WBPaper00037997 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00041771 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00065146 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |