WormBase Tree Display for Gene: WBGene00045183

WBGene00045183 SMap: S_parent: Sequence: T28C6
  Identity: Version: 1
    Name: Sequence_name: T28C6.10
      Molecular_name (3)
      Other_name: CELE_T28C6.10 Accession_evidence: NDB BX284604
      Public_name: T28C6.10
    DB_info: Database: AceView gene 4J583a
        WormFlux gene WBGene00045183
        NDB locus_tag CELE_T28C6.10
        NCBI gene 4926966
        RefSeq protein NM_001392360.1
        TrEMBL UniProtAcc A1EHR1
        UniProt_GCRP UniProtAcc A1EHR1
    Species: Caenorhabditis elegans
    History: Version_change: 1 04 Dec 2006 11:27:08 WBPerson4025 Event: Created
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (18)
    RNASeq_FPKM (74)
    Ortholog: chrIV_pilon.g11171 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00012119 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including ABalpapppa; ABalppappa; ABalpppapa; amphid neurons; and pharyngeal cell based on tiling array; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by eleven chemicals including multi-walled carbon nanotube; bisphenol S; and allantoin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T28C6.10
    Corresponding_transcript: T28C6.10.1
    Associated_feature: WBsf646190
      WBsf228742
  Experimental_info: RNAi_result: WBRNAi00070848 Inferred_automatically: RNAi_primary
      WBRNAi00054394 Inferred_automatically: RNAi_primary
      WBRNAi00036075 Inferred_automatically: RNAi_primary
      WBRNAi00019388 Inferred_automatically: RNAi_primary
      WBRNAi00070849 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028472
      Expr1040348
      Expr1157942
      Expr2006607
      Expr2024824
    Drives_construct: WBCnstr00023306
    Construct_product: WBCnstr00023306
    Microarray_results (30)
    Expression_cluster: WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:hypodermis_CoreEnriched
      WBPaper00037950:hypodermis_embryo_enriched
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:pharyngeal-muscle_embryo_enriched
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044786:emr-1(gk119)_upregulated
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049018:swsn-2.2(RNAi)_downregulated
      WBPaper00049377:MWCNT_downregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049954:BPS_upregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056330:glycine_downregulated
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060526:plp-1(ok2155)_downregulated
      WBPaper00060703:nas-38(ok3407)_upregulated
      WBPaper00060921:tdc-1(n3419)_downregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:ABarpaaa_lineage
      WBPaper00061340:ADL_parent
      WBPaper00061340:AMso_parent
      WBPaper00061340:ASK_parent
      WBPaper00061340:Body_wall_muscle
      WBPaper00061340:Ciliated_amphid_neuron
      WBPaper00061340:I1_parent
      WBPaper00061340:I2_grandparent
      WBPaper00061340:M1_parent
      WBPaper00061340:MC
      WBPaper00061340:Neuroblast_ADF_AWB
      WBPaper00061340:Neuroblast_AFD_RMD
      WBPaper00061340:Neuroblast_ASE_ASJ_AUA
      WBPaper00061340:Neuroblast_AWC_SAAVx
      WBPaper00061340:Neuroblast_BAG_SMDVx
      WBPaper00061340:Neuroblast_M2_M3
      WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
      WBPaper00061340:Parent_of_PVP_and_rect_V
      WBPaper00061340:Pharyngeal_neuron
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061699:daf-18(ok480)_downregulated
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062347:blmp-1(tm548)_upregulated
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00062590:Aging_upregulated_neuron
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064999:miR-229-64-65-66_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day1_25C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4489_group_14
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026980:intestine_enriched
      WBPaper00034661:AgNPs_downregulated
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00036286:Pattern_C
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00041207:CE_dauer_up
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00042258:DA1877_upregulated_GravidAdult
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:Cluster_B
  Map_info: Positive: Positive_clone: T28C6 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 3.97203
  Method: Gene