WormBase Tree Display for Gene: WBGene00044898

WBGene00044898 SMap: S_parent: Sequence: T21G5
  Identity: Version: 2
    Name: CGC_name: let-383 Person_evidence: WBPerson533
      Sequence_name: T21G5.6
      Molecular_name: T21G5.6
        T21G5.6.1
        CE40311
        T21G5.6.2
        T21G5.6.3
        T21G5.6.4
        T21G5.6.5
      Other_name: CELE_T21G5.6 Accession_evidence: NDB BX284601
      Public_name: let-383
    DB_info: Database: AceView gene 1H447
        WormFlux gene WBGene00044898
        NDB locus_tag CELE_T21G5.6
        NCBI gene 4926916
        RefSeq protein NM_001392488.1
        TrEMBL UniProtAcc A4V4W1
        UniProt_GCRP UniProtAcc A4V4W1
    Species: Caenorhabditis elegans
    History: Version_change: 1 05 Jun 2006 08:56:54 WBPerson1867 Event: Created
        2 03 Mar 2015 12:55:52 WBPerson2970 Event: Acquires_merge: WBGene00002603
              Name_change: CGC_name: let-383
      Acquires_merge: WBGene00002603
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: let
    Reference_allele: WBVar00146437
    Allele (80)
    Legacy_information: [C.elegansII] h115 : early to mid-larval lethal. OA3: h389, h527, h727. [Howell et al. 1987; [McKim et al. 1992; KR]
    Strain: WBStrain00023686
    RNASeq_FPKM (74)
    Ortholog (16)
    Structured_description: Automated_description: Enriched in germline precursor cell; hypodermis; intestine; and somatic gonad precursor based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by thirteen chemicals including rotenone; Zidovudine; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T21G5.6
    Corresponding_transcript: T21G5.6.1
      T21G5.6.2
      T21G5.6.3
      T21G5.6.4
      T21G5.6.5
    Other_sequence: CJC00286_1
      Dviv_isotig32627
      Acan_isotig15906
    Associated_feature (8)
  Experimental_info: RNAi_result: WBRNAi00004248 Inferred_automatically: RNAi_primary
      WBRNAi00082644 Inferred_automatically: RNAi_primary
      WBRNAi00082560 Inferred_automatically: RNAi_primary
      WBRNAi00035770 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025234
      Expr1040336
      Expr1157310
    Drives_construct: WBCnstr00023338
    Construct_product: WBCnstr00023338
    Microarray_results (26)
    Expression_cluster: WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:germline-precursors_embryo_enriched
      WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
      WBPaper00037950:hypodermis_embryo_enriched
      WBPaper00037950:hypodermis_embryo_SelectivelyEnriched
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00042561:smgl-1(RNAi)_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045861:wdr-5(ok1417)_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00046805:csr-1(RNAi)_upregulated_Set2
      WBPaper00048690:gonad-hermaphrodite-biased
      WBPaper00048690:hermaphrodite-Z1-Z4_enriched
      WBPaper00048690:male-Z1-Z4_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050504:hrp-2(RNAi)_downregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:intestine_enriched
      WBPaper00051404:alg-2(ok304)_downregulated
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055482:Tunicamycin_downregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056167:ifo-1(kc2)_upregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_L2
      WBPaper00056330:glycine_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00059604:fluvastatin_upregulated_N2
      WBPaper00059739:hira-1(gk835598)_downregulated_adult
      WBPaper00059739:hira-1(gk835598)_downregulated_L1
      WBPaper00059839:S.maltophilia_regulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
      WBPaper00060661:hypoxia_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061007:HB101_upregulated
      WBPaper00061040:eat-2(ad1116)_upregulated
      WBPaper00061040:FW1256_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062167:mbl-1(tm1563)_downregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_downregulated_N2
      WBPaper00062345:bortezomib_4h_downregulated_zip-1(jy13)
      WBPaper00062534:fat-P-80_downregulated
      WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
      WBPaper00064005:starvation_downregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064661:lpd-3(ok2138)_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064769:him-17(me24)_upregulated
      WBPaper00064788:ketamine_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_15
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026952:class_E
      WBPaper00026980:intestine_enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00041207:CE_dauer_down
      WBPaper00045673:colistin_upregulated
      WBPaper00055899:nitroguanidine_regulated
      [cgc6390]:Cluster_C
      [cgc6390]:herm_soma-enriched
  Map_info: Well_ordered
    Positive: Positive_clone: T21G5 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: 2_point: 2547
      Multi_point: 1033
        2141
      Pos_neg_data: 2703
        5074
        5353
        6168
        6542
        4173
    Interpolated_map_position: I 1.42612
  Reference: WBPaper00000975
    WBPaper00001557
    WBPaper00002829
    WBPaper00003985
    WBPaper00040589
  Method: Gene