WormBase Tree Display for Gene: WBGene00044068

WBGene00044068 Evidence: Inferred_automatically: Gene name parsed from strain object: VC756
  SMap: S_parent: Sequence: ZK867
  Identity: Version: 5
    Name: CGC_name: syd-9 Paper_evidence: WBPaper00027711
      Sequence_name: ZK867.1
      Molecular_name (18)
      Other_name: tag-239 Person_evidence: WBPerson201
        ztf-10 Person_evidence: WBPerson1997
        CELE_ZK867.1 Accession_evidence: NDB BX284606
      Public_name: syd-9
    DB_info: Database: AceView gene XH845
        WormQTL gene WBGene00044068
        WormFlux gene WBGene00044068
        NDB locus_tag CELE_ZK867.1
        Panther gene CAEEL|WormBase=WBGene00044068|UniProtKB=Q95PV6
          family PTHR24409
        NCBI gene 180985
        RefSeq protein NM_076812.7
            NM_001375059.1
            NM_001392799.1
            NM_001375061.2
            NM_076813.8
        SwissProt UniProtAcc A0A5E4M3Q4
        TREEFAM TREEFAM_ID TF315770
        UniProt_GCRP UniProtAcc A0A5E4M3Q4
    Species: Caenorhabditis elegans
    History: Version_change: 1 22 Dec 2004 16:59:41 WBPerson2970 Event: Created
        2 16 Jun 2006 16:28:50 WBPerson2970 Name_change: CGC_name: ztf-10
                Other_name: tag-239
        3 09 Oct 2006 16:15:01 WBPerson2970 Name_change: Other_name: syd-9
        4 08 Nov 2006 16:37:11 WBPerson1847 Name_change: CGC_name: syd-9
                Other_name: ztf-10
        5 10 Jun 2014 12:12:12 WBPerson1983 Event: Acquires_merge: WBGene00022828
      Acquires_merge: WBGene00022828
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: syd
    Allele (184)
    Strain: WBStrain00036039
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog (18)
    Paralog (12)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nuclear speck. Expressed in ASEL; ASER; muscle cell; nerve ring neurons; and neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK867.1b
      ZK867.1c
      ZK867.1d
      ZK867.1e
      ZK867.1f
    Corresponding_CDS_history: ZK867.1a:wp272
    Corresponding_transcript: ZK867.1b.1
      ZK867.1b.2
      ZK867.1b.3
      ZK867.1b.4
      ZK867.1c.1
      ZK867.1d.1
      ZK867.1e.1
      ZK867.1f.1
    Other_sequence (21)
    Associated_feature (28)
    Transcription_factor: WBTranscriptionFactor000497
  Experimental_info: RNAi_result (14)
    Expr_pattern (14)
    Drives_construct: WBCnstr00000606
      WBCnstr00012985
      WBCnstr00014268
      WBCnstr00014278
      WBCnstr00014314
      WBCnstr00014319
      WBCnstr00014323
      WBCnstr00014326
    Construct_product: WBCnstr00016822
      WBCnstr00016861
      WBCnstr00021935
    Antibody: WBAntibody00001114
      WBAntibody00001115
    Microarray_results (45)
    Expression_cluster: WBPaper00032976:dosage_compensated_genes
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00033070:Elbe_upregulated
      WBPaper00035197:fer-1_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045316:prg-1_upregulated_L2
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045420:fertilization_upregulated_transcript
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049098:heat-induced_hrde-1(tm1200)
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051265:F4_morc-1(tm6048)_upregulated
      WBPaper00051352:Long-Term-Association-Memory_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:embryo-to-L1_downregulated_WT_SMARTseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053664:ins-11(tm1053)_upregulated
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055648:male-tail_expressed
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056284:ints-1(RNAi)_downregulated
      WBPaper00056284:ints-11(RNAi)_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056446:hsb-1(cg116)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00058678:DAF-12_upregulated_PVD
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058958:100mGy-irradiation-72h_upregulated
      WBPaper00058969:RIS_enriched
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059224:tph-1(mg280)_upregulated
      WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059477:hlh-2(RNAi)_regulated
      WBPaper00059735:glucose_upregulated_lpin-1(RNAi)
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00059763:neuron_expressed
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:ADF_AWB
      WBPaper00061340:ASE_parent
      WBPaper00061340:ASG_AWA
      WBPaper00061340:ASI_parent
      WBPaper00061340:AVE
      WBPaper00061340:DB
      WBPaper00061340:DD
      WBPaper00061340:FLP
      WBPaper00061340:GLR
      WBPaper00061340:IL1_parent
      WBPaper00061340:MC
      WBPaper00061340:Neuroblast_ADE_ADA
      WBPaper00061340:Neuroblast_AIZ_FLP
      WBPaper00061340:Neuroblast_AWC_SAAVx
      WBPaper00061340:Neuroblast_HSN_PHB
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:Neuroblast_URX_CEPDx
      WBPaper00061340:NSM_parent
      WBPaper00061340:OLL_parent
      WBPaper00061340:OLQ_parent
      WBPaper00061340:RIC
      WBPaper00061340:RIC_parent
      WBPaper00061340:RIV
      WBPaper00061340:RME
      WBPaper00061340:RMED
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:ldb-1_2877-scd-1_3086
      WBPaper00061527:sol-1-jnk-1_18695
      WBPaper00061651:DVB_enriched
      WBPaper00061651:OLQ_enriched
      WBPaper00061651:PDB_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062520:qui-1(db104)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064871:hypoxia_downregulated_F2
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065841:36_0
      WBPaper00065841:65_0
      WBPaper00065841:72_0
      WBPaper00065841:124_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066093:E.coli-purE_downregulated
      cgc4386_cluster_6_5
      cgc4489_group_19
      WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
      WBPaper00025032:cluster_140
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031003:hlh_1_enriched
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00033101:spr-5_regulated
      WBPaper00034661:AgNPs_downregulated
      WBPaper00034739:N2moreDR1350
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
      WBPaper00041939:control_vs_UVC-exposed_3h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00045673:colistin_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc6390]:Cluster_A
    Interaction (63)
  Map_info: Map: X Position: -1.79069 Error: 0.002604
    Positive: Positive_clone: ZK867 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point (3)
      Pos_neg_data: 10764
        10765
        10766
        10767
  Reference: WBPaper00027711
    WBPaper00032847
    WBPaper00038491
    WBPaper00041549
    WBPaper00061738
  Remark: [061108 ar2] This gene originally had syd-9 as an Other_name and ztf-10 as CGC_name. These were swapped on the publication by Wang(2006)
    [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
  Method: Gene