WormBase Tree Display for Gene: WBGene00023422

WBGene00023422 SMap: S_parent: Sequence: F43C1
  Identity: Version: 2
    Name: CGC_name: mrpl-21 Person_evidence: WBPerson261
      Sequence_name: F43C1.6
      Molecular_name: F43C1.6
        F43C1.6.1
        CE37013
      Other_name: CELE_F43C1.6 Accession_evidence: NDB BX284603
      Public_name: mrpl-21
    DB_info: Database: AceView gene 3F332
        WormFlux gene WBGene00023422
        NDB locus_tag CELE_F43C1.6
        Panther gene CAEEL|WormBase=WBGene00023422|UniProtKB=Q6A575
          family PTHR21349
        NCBI gene 3565999
        RefSeq protein NM_001027414.7
        TREEFAM TREEFAM_ID TF324867
        TrEMBL UniProtAcc Q6A575
        UniProt_GCRP UniProtAcc Q6A575
    Species: Caenorhabditis elegans
    History: Version_change (2)
      Split_from: WBGene00009648
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrpl
    Allele (11)
    RNASeq_FPKM (74)
    GO_annotation: 00081810
      00081811
      00081812
      00081813
      00081814
      00126862
    Contained_in_operon: CEOP3164
    Ortholog (33)
    Structured_description: Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be located in cytoplasm and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is an ortholog of human MRPL21 (mitochondrial ribosomal protein L21). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F43C1.6
    Corresponding_transcript: F43C1.6.1
    Other_sequence (19)
    Associated_feature: WBsf226496
  Experimental_info: RNAi_result: WBRNAi00025487 Inferred_automatically: RNAi_primary
      WBRNAi00008789 Inferred_automatically: RNAi_primary
      WBRNAi00067799 Inferred_automatically: RNAi_primary
      WBRNAi00047162 Inferred_automatically: RNAi_primary
      WBRNAi00082402 Inferred_automatically: RNAi_primary
      WBRNAi00005636 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020270
      Expr1040134
      Expr1151026
      Expr2013706
      Expr2031941
    Microarray_results (19)
    Expression_cluster: WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00038061:aldicarb_upregulated
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045729:gld-4(RNAi)_downregulated
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056284:ints-1(RNAi)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064080:let-7_miRNA_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064130:Beta-Amyloid_downregulated_protein
      WBPaper00064716:paraquat_upregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030985:Serratia_marcesens_upregulated
      WBPaper00031003:hlh_1_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_5
      WBPaper00035560:ahr-1_downregulated
      WBPaper00037147:heatshock_upregulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042234:xpa-1_upregulated
      [cgc6390]:oogenesis-enriched
    Interaction: WBInteraction000007253
      WBInteraction000575222
  Map_info: Map: III Position: -3.46094
    Positive: Positive_clone: F43C1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene